Locus 8095

Sequence ID 3L_DroMel_CAF1
Location 21,282,733 – 21,282,853
Length 120
Max. P 0.604087
window13234

overview

Window 4

Location 21,282,733 – 21,282,853
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -38.92
Consensus MFE -36.39
Energy contribution -36.58
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 0.93
SVM decision value 0.14
SVM RNA-class probability 0.604087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21282733 120 + 23771897
AUUUUGCCAGCUAGCUCGCCCAUGGAAAGAGGGUUGCGUUGUUGGAAUUGGAACCGACUUGUACUGUUGGCAAGUGCGCCUUGGUAUUGGUGUUAGUAUUGGUAUUGACGUGGUCGUAUG
...((((((((..((..((((.(....)..)))).))...(((((........))))).......))))))))((((((((..((((..(((....)))..))))..)...)).))))). ( -38.40)
>DroSec_CAF1 40995 120 + 1
AUUUUGCCAGCUAGCUCGCCCAUGGAAAGAGGGUUGCGUUGUUGGAAUUGGAACCGACUUGUACUGUUGGCAAGUGCGCCUUGGUAUUGGUGUUAGUAUUGGUAUUGACGUGGUCGUAUG
...((((((((..((..((((.(....)..)))).))...(((((........))))).......))))))))((((((((..((((..(((....)))..))))..)...)).))))). ( -38.40)
>DroSim_CAF1 43257 120 + 1
AUUUUGCCAGCUAGCUCGCCCAUGGAAAGAGGGUUGCGUUGUUGGAAUUGGAACCGACUUGUACUGUUGGCAAGUGCGCCUUGGUAUUGGUGUUAGUAUUGGUAUUGACGUGGUCGUAUG
...((((((((..((..((((.(....)..)))).))...(((((........))))).......))))))))((((((((..((((..(((....)))..))))..)...)).))))). ( -38.40)
>DroEre_CAF1 42285 116 + 1
AUUUUGCCAGCAAGCUCGCCCAUGGA-AGAGGGUUGCGU---UGGAAUUGGAACCGACUUGUGCUGUUGGCAACUGCGCCUUGGUAGUGGUGUUAGUAUUGCUAUUGACGUGGUCGUAUG
...(((((((((.((.(((((.....-...))))...((---(((........)))))..).))))))))))).(((((((..((((..(((....)))..))))..)...)).)))).. ( -40.50)
>consensus
AUUUUGCCAGCUAGCUCGCCCAUGGAAAGAGGGUUGCGUUGUUGGAAUUGGAACCGACUUGUACUGUUGGCAAGUGCGCCUUGGUAUUGGUGUUAGUAUUGGUAUUGACGUGGUCGUAUG
...((((((((..((..((((.........)))).))((.(((((........)))))....)).))))))))((((((((..((((..(((....)))..))))..)...)).))))). (-36.39 = -36.58 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:12 2006