Locus 8092

Sequence ID 3L_DroMel_CAF1
Location 21,279,713 – 21,279,833
Length 120
Max. P 0.531975
window13224

overview

Window 4

Location 21,279,713 – 21,279,833
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -40.65
Consensus MFE -38.34
Energy contribution -38.27
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -1.45
Structure conservation index 0.94
SVM decision value -0.00
SVM RNA-class probability 0.531975
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21279713 120 + 23771897
AUGGAGGCAUCUGCCUCGCUUAAGGUGGCCAACUGCUGCAGCAGAUCCUUUUUCUUAUCCAAGAUUCUACGUAUUUGGGUGGCGCAGCAGUGGAACAUCUUGGCCAGACUGUUCCUAGAG
...(((((....)))))(((.((((((.(((.(((((((.(((((.......)))((((((((((.....)).))))))))))))))))))))..)))))))))................ ( -41.60)
>DroSec_CAF1 37955 120 + 1
AUGGAGGCAUCUGCUUCGCUUAAGGUGGCCAACUGCUGCAGCAGAUCCUUUUUCUUAUCCAAGAUUCUACGUAUUUGGGUGGCGCAGCAGUGGAACAUCUUGGCCAAACUGUUCCUCGAG
...(((((....))))).((..(((((((((((((((((.(((((.......)))((((((((((.....)).))))))))))))))))))((.....)))))))).......)))..)) ( -39.31)
>DroSim_CAF1 40218 120 + 1
AUGGAGGCAUCUGCUUCGCUUAAGGUGGCCAACUGCUGCAGCAGAUCCUUUUUCUUAUCCAAGAUUCUACGUAUUUGGGUGGCGCAGCAGUGGAACAUCUUGGCCAGACUGUUCCUCGAG
...((((((((((....(((.((((((.(((.(((((((.(((((.......)))((((((((((.....)).))))))))))))))))))))..))))))))))))).))..))))... ( -40.50)
>DroEre_CAF1 39194 120 + 1
AUGGAGGCAUCUGCUUCGCUCAAGGUGGCCAACUGCUGGAGCAGGUCCUUCUUCUUAUCCAAUAUUCUACGAAUUUGGGUGGCGCAGCAGUGGAACAUCUUGGCCAGACUGUUCCUCGAG
...((((((((((....((.(((((((.(((.((((((..(((((....)))...(((((((.((((...))))))))))))).)))))))))..))))))))))))).))..))))... ( -41.20)
>consensus
AUGGAGGCAUCUGCUUCGCUUAAGGUGGCCAACUGCUGCAGCAGAUCCUUUUUCUUAUCCAAGAUUCUACGUAUUUGGGUGGCGCAGCAGUGGAACAUCUUGGCCAGACUGUUCCUCGAG
...(((((....)))))((.(((((((.(((.(((((((.(((((.......)))((((((((..........))))))))))))))))))))..)))))))))................ (-38.34 = -38.27 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:02 2006