Locus 8091

Sequence ID 3L_DroMel_CAF1
Location 21,279,513 – 21,279,633
Length 120
Max. P 0.687641
window13223

overview

Window 3

Location 21,279,513 – 21,279,633
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -33.83
Consensus MFE -30.41
Energy contribution -30.54
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.90
SVM decision value 0.32
SVM RNA-class probability 0.687641
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21279513 120 - 23771897
GGUGCAUCCAAAUGCAGUUGAACAUCAGCAUAAGGAACCAAAAACUGAAGGAAACCGCCAUCCGGAUGGCAGCUGUGUUGAACCUGCCAUCCUUCAGACCAUCCUAUCGAUGGCUAAGCC
(((((((....)))).((((.....)))).......))).....((((((((..(((.....))).((((((..((.....)))))))))))))))).(((((.....)))))....... ( -38.60)
>DroSec_CAF1 37755 120 - 1
GGUGCAUCCAAAUGCACUUGAACAUCAGCAUAAGGAACCAAAAACUGAAGGAAACCGCCAUGCGGAUGGCCGCUGUCUUGAACCUGCCAUCCUUCAGACCAUCUUAUCGAUGGCUAAGCC
(((((((....))))))).........((...............((((((((..((((...)))).((((.(.(.......).).)))))))))))).(((((.....)))))....)). ( -35.60)
>DroSim_CAF1 40018 120 - 1
GGUGCAUCCAAAUGCACUUGAACAUCAGCAUAAGGAACCAAAAACUGAAGGAAACCGCCAUGCGGAUGGCCGCUGUCUUGAACCUGCCAUCCUUCAGACCAUCUUAUCGAUGGCUAAGCC
(((((((....))))))).........((...............((((((((..((((...)))).((((.(.(.......).).)))))))))))).(((((.....)))))....)). ( -35.60)
>DroEre_CAF1 38994 120 - 1
GGUGCAUCCAAAUGAACUUGAACAUCAGCAUAAGGAACCAAAAACUGAAGGAAACCGCCAUCCGGAUGGCCACUGUCUUGAACCUGCCCUCCUUUAGACCAUCCUAUCGGUGGCUAAGCC
(((...(((..(((....((.....)).)))..)))))).....((((((((....(((((....)))))((......)).........)))))))).(((((.....)))))....... ( -25.50)
>consensus
GGUGCAUCCAAAUGCACUUGAACAUCAGCAUAAGGAACCAAAAACUGAAGGAAACCGCCAUCCGGAUGGCCGCUGUCUUGAACCUGCCAUCCUUCAGACCAUCCUAUCGAUGGCUAAGCC
(((...(((..((((...((.....))))))..)))))).....((((((((..(((.....))).((((...............)))))))))))).(((((.....)))))....... (-30.41 = -30.54 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:01 2006