Locus 8087

Sequence ID 3L_DroMel_CAF1
Location 21,275,495 – 21,275,615
Length 120
Max. P 0.959904
window13215

overview

Window 5

Location 21,275,495 – 21,275,615
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.72
Mean single sequence MFE -32.72
Consensus MFE -30.08
Energy contribution -30.70
Covariance contribution 0.62
Combinations/Pair 1.05
Mean z-score -2.22
Structure conservation index 0.92
SVM decision value 1.51
SVM RNA-class probability 0.959904
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21275495 120 - 23771897
GCCAAAAGUCCGAGGAGUUUCGUAUUUACUUUCGAUUGCCACAAUCGGAAAUAAUUGACGGAAAGAUUAAGGCCAAUAUCUGGACACCUUACUCAAAACGAUUUAAUUCGGGCUUUAUCU
....((((((((((...((((((..(((.(((((((((...))))))))).)))...)))))).((.((((((((.....)))...))))).))............)))))))))).... ( -34.70)
>DroSec_CAF1 33788 120 - 1
GCCAGAAAUCCGAGGAGUUUCGUAUUUACUUUCGAUUGCCACAAUCGGAAAUAAUUGACGGAAAGAUUAAGGCCAACAUCUGGACACCUUACUCAAAGCGAUUCAAUUCGGGCUUUAUCU
(((........(((...((((((..(((.(((((((((...))))))))).)))...))))))....((((((((.....)))...))))))))....(((......))))))....... ( -29.90)
>DroSim_CAF1 36047 120 - 1
GCCAGAAAUCCGAGGAGUUUCGUAUUUACUUUCGAUUGCCACAAUCGGAAAUAAUUGACGGAAAGAUUAAGGCCAACAUCUGGACACCUUACUCAAAGCGAUUUCAUUCGGGCUUUAUCU
(((.(((((((...(((((((((..(((.(((((((((...))))))))).)))...))))))....((((((((.....)))...))))))))...).)))))).....)))....... ( -32.60)
>DroEre_CAF1 34937 120 - 1
GCCAGAAGUCCGAGGAGUUUCGCGUUUAUUUUCGAUUGCCACAAUCGGAAAUAAUUGACGGAAAGAUUAAGGCUAACAUCUGGACACCUUACUCAAAGCGUUUCAAUUCGGGCUAUAUCU
......((((((((..(...((((((((((((((((((...))))))))))))...))).....((.(((((....(....)....))))).))...)))...)..))))))))...... ( -33.70)
>consensus
GCCAGAAAUCCGAGGAGUUUCGUAUUUACUUUCGAUUGCCACAAUCGGAAAUAAUUGACGGAAAGAUUAAGGCCAACAUCUGGACACCUUACUCAAAGCGAUUCAAUUCGGGCUUUAUCU
....((((((((((...((((((..(((.(((((((((...))))))))).)))...)))))).((.((((((((.....)))...))))).))............)))))))))).... (-30.08 = -30.70 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:53 2006