Locus 8086

Sequence ID 3L_DroMel_CAF1
Location 21,273,981 – 21,274,101
Length 120
Max. P 0.748320
window13214

overview

Window 4

Location 21,273,981 – 21,274,101
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 91.94
Mean single sequence MFE -40.02
Consensus MFE -31.52
Energy contribution -31.52
Covariance contribution 0.00
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.79
SVM decision value 0.47
SVM RNA-class probability 0.748320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21273981 120 + 23771897
UAGUGAGCAGCAUAUGCAGUUCACUGCGGUUGAAAUACGGAUUCUGGACGUAAGCCUUGACAAUGGUCUUCUCGUUGUCGAUAUCGAACUGUCGCAUCGUUAACCGGCGAUGCUUGUUGC
......((((((...(((((((.....((((....((((.........))))))))((((((((((.....))))))))))....))))))).(((((((......))))))).)))))) ( -41.30)
>DroSec_CAF1 32281 120 + 1
UGGUGAGCAGCAUAUGCAGUUCGAUGUGACUGAAAUACGGAUUCUGGACGUAGGCCUUUACAAUGGUCUUCUCGUUGUCGAUAUCGAACUGUCGCAUCGUUAAACGGCGAUGCUUGUUCC
....((((((.....(((((((((((((((.......(((...)))((((.(((((........)))))...))))))).)))))))))))).(((((((......))))))))))))). ( -44.80)
>DroSim_CAF1 34543 120 + 1
UGGUGAGCAGCAUAUGCAGUUCGAUGCUACUGAAAUACGGAUUCUGGACGUAGGCCUUUACAAUUGUCUUCUCGUUGUCGAUAUCGAACUGUCGCAUCGUUAAACGGCGAUGCUUGUUCC
....((((((.....(((((((((((....(((...(((((....(((((...(......)...))))))).)))..))).))))))))))).(((((((......))))))))))))). ( -36.00)
>DroEre_CAF1 33432 120 + 1
UGGUGAGCAGCAUAUGCAGCUCACUGCGGCUGAAAUACAGAUUGUGGACGUAGGCCUUAACAAUGGUCUUCUCGUUGUCGAUAUCGAACUGUCGCAUUGUUAACCGGCGAUGCUUAUUGC
.(((((((.((....)).)))))))((((.(((...((((......((((.(((((........)))))...)))).(((....))).)))).(((((((......)))))))))))))) ( -38.00)
>consensus
UGGUGAGCAGCAUAUGCAGUUCAAUGCGACUGAAAUACGGAUUCUGGACGUAGGCCUUUACAAUGGUCUUCUCGUUGUCGAUAUCGAACUGUCGCAUCGUUAAACGGCGAUGCUUGUUCC
.(((((((.((....)).)))))))...........((((......((((.(((((........)))))...)))).(((....))).)))).(((((((......)))))))....... (-31.52 = -31.52 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:52 2006