| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,271,832 – 21,271,992 |
| Length | 160 |
| Max. P | 0.765259 |
| Location | 21,271,832 – 21,271,952 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.26 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.60 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21271832 120 + 23771897 AACUUCUGAAAUGAGUUUAUAUUAUUGUUGUUACAUUUAAACCUCUAAAAGUAUGAAACCUACGAAGUGUCCAUUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACACAAAAAU .(((((...(((((.......)))))(((..(((.((((......)))).)))...)))....))))).....((((((........))))))..(((((((...)))))))........ ( -21.90) >DroSec_CAF1 30135 119 + 1 AACUUCUAAGCUGAUUUUAUAUUAAUGUUGUUACAUUUUAACCUCUAAAAGUUUGAAACGUACGAAGUGUCCAAUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA-A .(((((((((((...........(((((....)))))............))))))........)))))......(((((........)))))...(((((((...)))))))......-. ( -21.40) >DroSim_CAF1 32391 119 + 1 AACUUCUAAACUGAUUUUAUAUUAAUGUUGUUACAUUUUAACCUCUAAAAGUUUGAAACGUACGAAGUGUCCAAUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA-A .(((((((((((...........(((((....)))))............))))))........)))))......(((((........)))))...(((((((...)))))))......-. ( -21.40) >DroEre_CAF1 31308 116 + 1 AACUUUUACAAUGAUUUUAUAU---UGCUGCUACAUUUAAACAUCUAAAAGUUUGAAGCCUAAGAAAUGUCCAAUCGGGAAAGCUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA-A ............((((..((((---(.((......(((((((........))))))).....)).)))))..))))(((........))).....(((((((...)))))))......-. ( -19.80) >consensus AACUUCUAAAAUGAUUUUAUAUUAAUGUUGUUACAUUUAAACCUCUAAAAGUUUGAAACCUACGAAGUGUCCAAUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA_A .(((((...................(((....)))(((((((........)))))))......)))))......(((((........)))))...(((((((...)))))))........ (-16.54 = -17.60 + 1.06)
| Location | 21,271,872 – 21,271,992 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.21 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -19.23 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21271872 120 + 23771897 ACCUCUAAAAGUAUGAAACCUACGAAGUGUCCAUUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACACAAAAAUCCCGCAUCGAUAAUUUUUUAUAUGUGACUGCGUUGUAUAA ......................(((.(((....((((((........))))))..(((((((...)))))))..........))).)))...........((((..((...))..)))). ( -22.80) >DroSec_CAF1 30175 119 + 1 ACCUCUAAAAGUUUGAAACGUACGAAGUGUCCAAUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA-ACACGCAUCGAUCAUUUUUUAUAUGUGACUGCGUUGUAUAA ................(((((((((.((((....(((((........)))))...(((((((...)))))))......-..)))).))).((((.........)))).))))))...... ( -25.70) >DroSim_CAF1 32431 119 + 1 ACCUCUAAAAGUUUGAAACGUACGAAGUGUCCAAUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA-ACCCGCAUCGAUCAUUUUUUAUAUGUGACUGCGUUGUAUAA ................(((((((((.(((.....(((((........)))))...(((((((...)))))))......-...))).))).((((.........)))).))))))...... ( -24.50) >DroEre_CAF1 31345 115 + 1 ACAUCUAAAAGUUUGAAGCCUAAGAAAUGUCCAAUCGGGAAAGCUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA-AC--AAAUCGAUCAUUAUUU--AUGUGACUGCGUUGUAUAA (((......((((....((.((((.((((((...(((((........)))))...(((((((...)))))))......-..--.....)).)))).)))--).))))))....))).... ( -19.70) >consensus ACCUCUAAAAGUUUGAAACCUACGAAGUGUCCAAUCGGGAAAUGUCACCCGAAAAGUACAUAAAAUAUGUACAAAAAA_ACCCGCAUCGAUCAUUUUUUAUAUGUGACUGCGUUGUAUAA ....................(((((...(((((.(((((........)))))...(((((((...)))))))..............................)).)))....)))))... (-19.23 = -19.48 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:49 2006