Locus 8083

Sequence ID 3L_DroMel_CAF1
Location 21,271,497 – 21,271,617
Length 120
Max. P 0.854799
window13209

overview

Window 9

Location 21,271,497 – 21,271,617
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -40.14
Consensus MFE -36.62
Energy contribution -35.88
Covariance contribution -0.75
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.91
SVM decision value 0.80
SVM RNA-class probability 0.854799
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21271497 120 + 23771897
UACAUGUUCUUCUACAAGGAGGAUGUGGAGUACUUCAAGCCUGUGAAACUAAGAACCAAGUGCGGACGGCUGGGACACAUUAAGGAGUCACUGGGCACGCACGGCCACAUGAAGUGCUAC
..((((((((((.....)))))))))).(((((((((.(((.((..........))...(((((...(.(..((((.(......).))).)..).).))))))))....))))))))).. ( -40.00)
>DroSec_CAF1 29775 120 + 1
UACAUGUUCUUCUACAAGGAGGAUGUGGAGUACUUCAAGCCUGUGAAACUAAGAACCAAGUGCGGACGGCUGGGACACAUCAAGGAGUCACUGGGCACGCACGGCCACAUGAAGUGCUAC
..((((((((((.....)))))))))).(((((((((.(((.((..........))...(((((...(.(..((((.(......).))).)..).).))))))))....))))))))).. ( -40.00)
>DroSim_CAF1 32031 120 + 1
UACAUGUUCUUCUACAAGGAGGAUGUGGAGUACUUCAAGCCUGUGAAACUAAGAACCAAGUGCGGGCGGUUGGGACACAUCAAGGAGUCACUGGGCACGCACGGCCACAUGAAGUGCUAC
..((((((((((.....)))))))))).(((((((((.(((((((...(((....((((.((....)).))))(((.(......).)))..)))...)))).)))....))))))))).. ( -39.70)
>DroEre_CAF1 30954 120 + 1
UACAUGUUCUUCUACAAGGAAGAUGUAGAGUACUUCAAGCCUGUGAAACUAAGAACCAAGUGCGGACGCCUGGGACACAUCAAGGAGUCGCUGGGCACGCACGGUCAUAUGAAGUGCUAC
(((((.(((((.....))))).))))).(((((((((....(((((.............(((((...(((..((((.(......).))).)..))).)))))..)))))))))))))).. ( -40.86)
>consensus
UACAUGUUCUUCUACAAGGAGGAUGUGGAGUACUUCAAGCCUGUGAAACUAAGAACCAAGUGCGGACGGCUGGGACACAUCAAGGAGUCACUGGGCACGCACGGCCACAUGAAGUGCUAC
(((((.(((((.....))))).))))).(((((((((.(((.((..........))...(((((...(.(..((((.(......).))).)..).).))))))))....))))))))).. (-36.62 = -35.88 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:47 2006