Locus 8082

Sequence ID 3L_DroMel_CAF1
Location 21,271,297 – 21,271,417
Length 120
Max. P 0.831823
window13208

overview

Window 8

Location 21,271,297 – 21,271,417
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.81
Mean single sequence MFE -49.15
Consensus MFE -48.76
Energy contribution -48.58
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.76
Structure conservation index 0.99
SVM decision value 0.72
SVM RNA-class probability 0.831823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21271297 120 - 23771897
UGCAGGACAGCAGGCGUCCACGGGCAACCAGCGCCAGGGUGGAGUCGGGAUUCACCUUGAAGGCCAGCACGGGUGCCGGAGGGAACUGAAUCGGUGCGUAAAACGUGGCGCAAACUGUUU
....((((((...(((.((((((....)).(((((((((((((.......))))))))((...((.(((....))).))((....))...))))))).......)))))))...)))))) ( -47.50)
>DroSec_CAF1 29575 120 - 1
UGCAAGACAGCAGGCGUCCACGGGCAACCAGCGCCAGGGUGGAGUCGGGAUUCACCUUGAAGGCCAGCACGGGUGCCGGAGGAAACUGAAUCGGUGCGUAAAACGUGGCGCAAACUGUCU
....((((((...(((.((((((....)).(((((((((((((.......))))))))((...((.(((....))).))((....))...))))))).......)))))))...)))))) ( -51.70)
>DroSim_CAF1 31831 120 - 1
UGCAAGACAGCAGGCGUCCACGGGCAACCAGCGCCAGGGUGGAGUCGGGAUUCACCUUGAAGGCCAGCACGGGUGCCGGAGGAAACUGAAUCGGUGCGUAAAACGUGGCGCAAACUGUCU
....((((((...(((.((((((....)).(((((((((((((.......))))))))((...((.(((....))).))((....))...))))))).......)))))))...)))))) ( -51.70)
>DroEre_CAF1 30754 120 - 1
UGCAGGACAACAGGCGUCCACGGGCCACCAGCGCCAGGGUGGAGUCGGGAUUCACCUUGAAGGCCAGCACGGCUGCCGGAGGGAACUGAAUCGGUGCAUAAAACGUGGCGCAAACUGUCU
....(((((....(((.((((((....)).(((((((((((((.......))))))))((.(((.(((...))))))..((....))...))))))).......)))))))....))))) ( -45.70)
>consensus
UGCAAGACAGCAGGCGUCCACGGGCAACCAGCGCCAGGGUGGAGUCGGGAUUCACCUUGAAGGCCAGCACGGGUGCCGGAGGAAACUGAAUCGGUGCGUAAAACGUGGCGCAAACUGUCU
....((((((...(((.((((((....)).(((((((((((((.......))))))))((...((.(((....))).))((....))...))))))).......)))))))...)))))) (-48.76 = -48.58 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:46 2006