Locus 8080

Sequence ID 3L_DroMel_CAF1
Location 21,270,502 – 21,270,622
Length 120
Max. P 0.877106
window13206

overview

Window 6

Location 21,270,502 – 21,270,622
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -38.58
Consensus MFE -34.33
Energy contribution -34.45
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.89
SVM decision value 0.90
SVM RNA-class probability 0.877106
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21270502 120 - 23771897
AUCGUACUUUUCGUCGUUGAUGGCAGCCUCCGAGGCCACGGACACGGUGUCCUGGAACUCCUCAGUGUCUGAGUCCCGCUUCUCGUACUCAUCCUCAAAGGAUUUGUUGUCGCACGACAU
............((((((((..((((..((((((((((.((((.....)))))))....)))).(.(..(((((..((.....)).)))))..).)...))).))))..))).))))).. ( -38.20)
>DroSec_CAF1 28779 120 - 1
AUCAUACUUUUCGUCGUUGAUGGCAGCCUCUGAGGCCACGGACACGCUGUCCUGGAACUCCUCAGUGUCUGAGUCGCGCUUCUCGUACUCAUCCUCAAAGGAUUUGUUGUCGCACGACAU
............((((((((..(((.(((.((((((((.((((.....)))))))..............(((((.(((.....)))))))).))))).)))...)))..))).))))).. ( -41.90)
>DroSim_CAF1 31035 120 - 1
AUCGUACUUUUCGUCGUUGAUGGCAGCCUCCGAGGCCACGGACACGCUGUCCUGGAACUCCUCAGUGUCUGAGUCGCGCUUCUCGUACUCAUCCUCAAAGGAUUUGUUGUCGCACGACAU
............((((((((..((((..((((((((((.((((.....)))))))....)))).(.(..(((((.(((.....))))))))..).)...))).))))..))).))))).. ( -40.90)
>DroEre_CAF1 29957 120 - 1
AUCGUAUUUUUCGUCGUUGAUAGCAGCUUCAGAGGCCACGGACACGCUAUCCUGGAAUUCCUCAGUAUCUGAAUCCCGCCUCUCGUACUCAUCCUCAAAGGAUUUGUUGUCGCACGACAU
............((((((((((((((....((((((...(((...........((....))((((...)))).))).)))))).......((((.....))))))))))))).))))).. ( -33.30)
>consensus
AUCGUACUUUUCGUCGUUGAUGGCAGCCUCCGAGGCCACGGACACGCUGUCCUGGAACUCCUCAGUGUCUGAGUCCCGCUUCUCGUACUCAUCCUCAAAGGAUUUGUUGUCGCACGACAU
............(((((((((((((.(((..(((((((.((((.....))))))).....(((((...)))))...................))))..)))...)))))))).))))).. (-34.33 = -34.45 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:44 2006