Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,443,101 – 2,443,196 |
Length | 95 |
Max. P | 0.930853 |
Location | 2,443,101 – 2,443,196 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 76.37 |
Mean single sequence MFE | -30.09 |
Consensus MFE | -19.93 |
Energy contribution | -19.60 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.19 |
Mean z-score | -1.76 |
Structure conservation index | 0.66 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2443101 95 - 23771897 GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAUGUAGCC------GAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGUAAUAGA--AGAAU-------------AUAUGU ......(((.(.....).)))((((.(((((((((....((------(....(((....))).))).))))))))).)))).........--.....-------------...... ( -29.90) >DroVir_CAF1 69328 106 - 1 GAAUGUCCAGCGGCUUGGUAGGCUUAAAGGCCGACGUUGCC------GAAAUGUCAAAUGGCGCGGAGUUCGCUUUAAAGCUGCAGACAAAUUGAAUAAGUUUCGAGAUUA----U ...((((..((((((((((..((((...((((((((((...------..))))))....))).).))))..)))...))))))).))))..(((((.....))))).....----. ( -32.40) >DroPse_CAF1 73857 97 - 1 GAAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGACGUGCCCGACGACGAGAUGUCAAAGGACGUGGAGUUGGCUUUAAAGCUGCAAAAGAGUGGAAU------------------- .....(((((((((((.((.((((....)))).))..(((.(((..(...(((((....))))))..))))))....))))))).......))))..------------------- ( -31.31) >DroWil_CAF1 81494 88 - 1 GUAUGUCCAGCGGCUUGGUGGGCUUAAAGGCCGAUGAGGCC------GAGAUGUCAAAGGGUGUGGAGUUGGCUUUGAAGCUGUAGAA-----AUAU-------------A----A ((((.(((((((((((.((.((((....)))).)).)))))------......((((((.............)))))).))))..)).-----))))-------------.----. ( -28.32) >DroYak_CAF1 63810 91 - 1 GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGAGCUGGCC------GAGAUGUCGAAGGGCGCGGAGUUGGCUUUGAAGCUGCAAGAGA--AGAAU-------------A----C ((....)).((((((((((.((((((.....)))))).)))------.....(((....))).(((((....))))))))))))......--.....-------------.----. ( -33.80) >DroAna_CAF1 53280 91 - 1 GGAUGUCCAGUGGCUUCGUGGGCUUGAAGGCGGACGUGGCC------GAGAUGUCAAAGGGCGCGGAGUUGGCUUUAAAGCUGUAGAGAA--AGAGU-------------A----G .((((((...(((((.(((..(((....)))..))).))))------).))))))..(.(((..((((....))))...))).)......--.....-------------.----. ( -24.80) >consensus GGAUGUCCAGCGGCUUGGUGGGCUUGAAGGCCGACGUGGCC______GAGAUGUCAAAGGGCGCGGAGUUGGCUUUAAAGCUGCAAAAGA__AGAAU_____________A____U .........((((((((((.(((((...(((.......)))...........(((....)))...))))).)))...)))))))................................ (-19.93 = -19.60 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:43 2006