Locus 8078

Sequence ID 3L_DroMel_CAF1
Location 21,269,625 – 21,269,745
Length 120
Max. P 0.838673
window13199

overview

Window 9

Location 21,269,625 – 21,269,745
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.69
Mean single sequence MFE -39.62
Consensus MFE -35.17
Energy contribution -35.92
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.89
SVM decision value 0.74
SVM RNA-class probability 0.838673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21269625 120 - 23771897
AAGAUCUCGUCAUCGCCAAAGGCUGCGGUGGUCAAAAGCAGGGUGGUGUCGCAAACCUUAAGGUAAUCCAGGGCAAUUAGCUCAUUUCCGCGUCCCACUGGUGGUGUGACAAAAGCGAAA
........((((.(((((....((((..(.....)..))))(((((.(.(((..(((....)))......((((.....))))......))).))))))..))))))))).......... ( -38.00)
>DroSec_CAF1 27902 120 - 1
AAGAUCUCGUCAUCGCCAAAGGCGGCGGAAGUCAAAAGCAGGGUGGUGUCGCAAACCUUAAGGUAAUCCAGGGCAAUUAGCUCAUUUCCGCGACCCACAGGUGGUGUGACAAAAGCAAAA
........((((.((((......(((....)))....((...((((.(((((..(((....)))......((((.....))))......)))))))))..)))))))))).......... ( -41.70)
>DroSim_CAF1 30158 120 - 1
AAGAUCUCGUCAUCGCCAAAGGCGGCGGAAGUCAAAAGCAGGGUGGUGUCGCACACCUUAAGGUAAUCCAGGGCAAUUAGCUCGUUUCCGCGACCCACAGGUGGUGUGACAAAAGCAAAA
........((((.((((......(((....)))....((...((((.(((((..(((....)))......((((.....))))......)))))))))..)))))))))).......... ( -41.70)
>DroEre_CAF1 29077 120 - 1
AAGAUCUCGUCAUCGCCAAAGGCGGCGGAGGUCAAAAGCAGCGUGGUGUCGCAAACCUUAAGGUAAUCCAGGGCAAUUAGCUCAUUUCCACGACCCACAGGUGGUGUGACAAAAGCAAAA
..((((((..(..((((...))))..))))))).......((....(((((((.((((...(((......((((.....)))).........)))...))))..)))))))...)).... ( -37.06)
>consensus
AAGAUCUCGUCAUCGCCAAAGGCGGCGGAAGUCAAAAGCAGGGUGGUGUCGCAAACCUUAAGGUAAUCCAGGGCAAUUAGCUCAUUUCCGCGACCCACAGGUGGUGUGACAAAAGCAAAA
........((((.(((((.....(((....))).........((((.(((((..(((....)))......((((.....))))......)))))))))...))))))))).......... (-35.17 = -35.92 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:37 2006