| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,268,549 – 21,268,646 |
| Length | 97 |
| Max. P | 0.991565 |
| Location | 21,268,549 – 21,268,646 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.53 |
| Mean single sequence MFE | -10.40 |
| Consensus MFE | -10.30 |
| Energy contribution | -9.63 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.99 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21268549 97 + 23771897 -----------------------AAAUUGUUUACACACCCCACUAAUGAAUACGCUACGCAAUUAAGUUAAUUAUUACUAAUUACGCCUGUGUAAGCCCAAUCAGAAACCCAUUCCCAAA -----------------------.....(((((((((................((...))......((.(((((....)))))))...)))))))))....................... ( -10.40) >DroSim_CAF1 29064 120 + 1 NNNNNNNNNNNNNNNNGCCCUGGAAAUUGUUUACACACACCACUAAUGAAUACCCUACGCAAUUAAGUUAAUUAUUACUAAUUACGUCUGUGUAAGCCCAAUCAUAAACCCAUUCCCAAA ....................(((.....(((((((((.((...((((.((((....((........))....))))....)))).)).)))))))))))).................... ( -12.70) >DroEre_CAF1 27996 95 + 1 -----------------------AAAUCGUUUACAUUCCCCACUAAUGAAUAC-CUACGCAAUUAAGUUAAUUAUUACUAAUUACGCCAGUGUAAGCCCAAGCAUAAACCCAUUCG-AAA -----------------------.....(((((((((.....(....).....-...((.(((((.((........))))))).))..)))))))))...................-... ( -8.10) >consensus _______________________AAAUUGUUUACACACCCCACUAAUGAAUAC_CUACGCAAUUAAGUUAAUUAUUACUAAUUACGCCUGUGUAAGCCCAAUCAUAAACCCAUUCCCAAA ............................(((((((((.....(....).........((.(((((.((........))))))).))..)))))))))....................... (-10.30 = -9.63 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:30 2006