Locus 8074

Sequence ID 3L_DroMel_CAF1
Location 21,267,277 – 21,267,387
Length 110
Max. P 0.741465
window13190

overview

Window 0

Location 21,267,277 – 21,267,387
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.58
Mean single sequence MFE -39.25
Consensus MFE -33.56
Energy contribution -34.12
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 0.45
SVM RNA-class probability 0.741465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21267277 110 + 23771897
UGGAGACCUCGGCCAAGACGGGACUCAAUGUGGAGCUGUCCUUCACAGCGGUGGCCAGGUGAGUUCU-CCUUGCAACGCCAUCCUAAAUUCGAUUUAUUUCCAAUUGGGAA---------
.(....)((((.......)))).((((((.(((((((((.....)))))((((((...(..((....-.))..)...))))))................))))))))))..--------- ( -34.10)
>DroSec_CAF1 25517 110 + 1
UGGAGACCUCGGCCAAGACGGGACUCAACGUGGAGCUGUCCUUCACAGCGGUGGCCAGGUGAGUUCU-CCUUGCAACUCCAUCCUAAAUUGGAUUUAUUUCCAAUUGGGAG---------
(((((......((.(((..((((((((.(.(((.(((((.....))))).....))).)))))))))-.)))))..)))))((((((.(((((......))))))))))).--------- ( -41.50)
>DroSim_CAF1 27020 110 + 1
UGGAGACCUCGGCCAAGACGGGACUCAACGUGGAGCUGUCCUUCACAGCGGUGGCCAGGUGAGUUCU-CCUUGCAACUCCGUCCUAAAUUGGAUUUAUUUCCAAUUGGGAU---------
.((((......((.(((..((((((((.(.(((.(((((.....))))).....))).)))))))))-.)))))..))))(((((((.(((((......))))))))))))--------- ( -41.60)
>DroEre_CAF1 26654 120 + 1
UGGAGACCUCGGCCAAGACGGGACUCAAUGUGGAGCUGUCCUUCACAGCGGUGGCCAGGUGAGUUGUGCCUUGCAACUGCUUUCUAAAUUGGAUUCAUUUCCAAUUGGGCGGGUAUAUUA
.....(((.((.((.....((((.....(((((((.....)))))))(((((.((.((((.......)))).)).))))).)))).(((((((......))))))))).)))))...... ( -39.80)
>consensus
UGGAGACCUCGGCCAAGACGGGACUCAACGUGGAGCUGUCCUUCACAGCGGUGGCCAGGUGAGUUCU_CCUUGCAACUCCAUCCUAAAUUGGAUUUAUUUCCAAUUGGGAG_________
.((((((((.(((((..(((........)))...(((((.....)))))..)))))))))..((........))..)))).((((((.(((((......))))))))))).......... (-33.56 = -34.12 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:29 2006