| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,265,697 – 21,265,796 |
| Length | 99 |
| Max. P | 0.948649 |
| Location | 21,265,697 – 21,265,796 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.40 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -12.61 |
| Energy contribution | -12.39 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.74 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21265697 99 + 23771897 AUCAUUAAAAUAAAAAAAACCUUUUGAAAUGAAACC-AACGAAGUG--------------------GUGGCGCUUCAUGAGCCCAGUCUAUGAUAAGCCAGAAAUUCUUGGCUCAUCUUU ....................(((.((((.((..(((-(......))--------------------))..)).)))).)))..........(((.((((((......)))))).)))... ( -19.90) >DroSec_CAF1 23816 97 + 1 AUCAUUACAAUAAAAGUA--CUUUUGAAAUGAAACC-AACGAAGUG--------------------GUGGCGCUUCUUGAGUCCAGUCUAUGCUGAGCCAGAUAUUCUUGGCUCAUCUUU ...............(.(--(((..(((.((..(((-(......))--------------------))..)).)))..)))).).........((((((((......))))))))..... ( -23.20) >DroEre_CAF1 24864 112 + 1 AUCAUUAAAAUAGACAUU--CUUUUGAAAUGAAGUGAAACGAAGUGUAUUAUAUAUAUACAACUUUGUGGCGCUUCAUGAGA--AAUUGAUG----GCCAGAAAUUCCUGGCUCAUCUUU ................((--(((.....((((((((..(((((((((((.......)))).)))))))..))))))))))))--)...((((----(((((......))))).))))... ( -36.30) >consensus AUCAUUAAAAUAAAAAUA__CUUUUGAAAUGAAACC_AACGAAGUG____________________GUGGCGCUUCAUGAGACCAGUCUAUG_U_AGCCAGAAAUUCUUGGCUCAUCUUU ............................((((........((((((........................))))))....................(((((......))))))))).... (-12.61 = -12.39 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:28 2006