Locus 8071

Sequence ID 3L_DroMel_CAF1
Location 21,264,866 – 21,264,986
Length 120
Max. P 0.839049
window13185

overview

Window 5

Location 21,264,866 – 21,264,986
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.64
Mean single sequence MFE -28.38
Consensus MFE -25.77
Energy contribution -25.52
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.91
SVM decision value 0.74
SVM RNA-class probability 0.839049
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21264866 120 + 23771897
UGUUGCUUUCAGUGUGCUUAUUAUUGUGCGCGGUUUAACAUUUAGGGACUUUGUUAUCCUGGCCGGAGGCAUUUCCUUUGCCUCAGUCUAUAACCUCCCAUAUAUCCAUCCUCCUUUCUA
(((((...((.(((..(........)..)))))..)))))....((((....(((((...(((..((((((.......)))))).))).))))).))))..................... ( -29.20)
>DroSec_CAF1 22988 120 + 1
UGUUGCUUUCAGUGUGCUUAUUAUUGUGCGCGGUUUAACAUUUAGGGGUUUUGUUAUCCUGGCCGGAGGCAUUUCCUUUGCCUCAGUCCAUAACCUCCCAUAUAUCCAUCCUCCUUCCUC
(((((...((.(((..(........)..)))))..))))).....(((....((((...(((.(.((((((.......)))))).).)))))))..)))..................... ( -27.90)
>DroSim_CAF1 24478 120 + 1
UGUUGCUUUCAGUGUGCUUAUUAUUGUGCGCGGUUUAACAUUUAGGGGCUUUGUUAUCCUGGCCGGAGGCAUUUCCUUUGCCUCAGUCUAUAACCUCCCAUAUAUCCAUCCUCCUUCCUC
(((((...((.(((..(........)..)))))..)))))....((((....(((((...(((..((((((.......)))))).))).))))).))))..................... ( -28.30)
>DroEre_CAF1 24087 116 + 1
UGUUGAUUUCAGUGUGCUUAUUAUUGUGCGCGGUUUAACAUUUAGGGGCUUUGCUAUCCUGGCCAGAGGCAUUUCCUUUGCCCCAGUCUGUAAUCUUCCAUA----CAUCCUCUUUGCUC
((((((.....(((..(........)..)))...))))))....((((..((((....((((.((((((.....))))))..))))...))))..))))...----.............. ( -28.10)
>consensus
UGUUGCUUUCAGUGUGCUUAUUAUUGUGCGCGGUUUAACAUUUAGGGGCUUUGUUAUCCUGGCCGGAGGCAUUUCCUUUGCCUCAGUCUAUAACCUCCCAUAUAUCCAUCCUCCUUCCUC
(((((...((.(((..(........)..)))))..)))))....((((....(((((...(((..((((((.......)))))).))).))))).))))..................... (-25.77 = -25.52 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:24 2006