Locus 8070

Sequence ID 3L_DroMel_CAF1
Location 21,264,668 – 21,264,788
Length 120
Max. P 0.739661
window13184

overview

Window 4

Location 21,264,668 – 21,264,788
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -25.78
Consensus MFE -22.05
Energy contribution -22.43
Covariance contribution 0.38
Combinations/Pair 1.06
Mean z-score -2.03
Structure conservation index 0.86
SVM decision value 0.45
SVM RNA-class probability 0.739661
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21264668 120 - 23771897
ACAUCAACAAGUCCUUUUCAAGUUCACAUGCUUUUUAAUAAACAGUCCCCCAAGGAUUUUUAUCUCUAUCAACAAAGUAGGAGGUUGGGUUUGAACAAGAACUAAACGUAAAGAGGACAA
..........(((((((((((.(((...((((((...(((((.(((((.....))))))))))..........)))))).))).)))(((((......))))).......)))))))).. ( -23.72)
>DroSec_CAF1 22795 120 - 1
ACAUCAACAAGUCCUUUUCAAGUUCACAUGCUUUUUAAUAAAUAGUCCCCCAAGGAUCUUUAUCUCUAUCAACAGAGUAGGAGGUUGGGUUUAAACAAGAACUAAACGUAAAGAGGACAA
..........((((((((..(((((....(((...........)))..(((((...((((...((((......)))).))))..))))).........))))).......)))))))).. ( -24.40)
>DroSim_CAF1 24285 120 - 1
ACAUCAACAAGUCCUUUUCAAGUUCACAUGCUUUUUAAUAAAUAGUCCCCCAAGGAUCUUUAUCUCUAUCAACAGAGUAGGAGGUUGGGUUUAAACAAGAACUAAACGUAAAGAGGACAA
..........((((((((..(((((....(((...........)))..(((((...((((...((((......)))).))))..))))).........))))).......)))))))).. ( -24.40)
>DroEre_CAF1 23907 119 - 1
ACAUCUACAAGUCCUUUUCAAGUUCACAUGCUUCUUAAUAAAUAGUCCCCCAAGGAUCUUUAUCUCUAUCAACAGAGUAGGAAGUUGGGCUUGAACAAGAACUAAACGUAAA-AGGACAA
..........((((((((((((((((...((((((((...((..((((.....))))..))..((((......)))))))))))))))))))))......((.....)).))-))))).. ( -30.60)
>consensus
ACAUCAACAAGUCCUUUUCAAGUUCACAUGCUUUUUAAUAAAUAGUCCCCCAAGGAUCUUUAUCUCUAUCAACAGAGUAGGAGGUUGGGUUUAAACAAGAACUAAACGUAAAGAGGACAA
..........((((((((...(((..((.((((((((...((..((((.....))))..))..((((......))))))))))))))(((((......))))).)))...)))))))).. (-22.05 = -22.43 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:23 2006