Locus 8069

Sequence ID 3L_DroMel_CAF1
Location 21,263,655 – 21,263,775
Length 120
Max. P 0.536706
window13183

overview

Window 3

Location 21,263,655 – 21,263,775
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.92
Mean single sequence MFE -35.57
Consensus MFE -32.67
Energy contribution -32.92
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.01
SVM RNA-class probability 0.536706
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21263655 120 - 23771897
CAAACGGCGGGAAUGAAGCGCUUACCCUAAAAUCAAUGCCAACUGUGCUGAGGAAAUAGCUCGGCACAUAGCGACCAUCGCGGAAACGGAUCAAAAGUGAGGUCUUGCCCACUCCCGAAU
.......(((((.((..((..................((....(((((((((.......)))))))))..))((((.((.((....))))(((....)))))))..)).)).)))))... ( -37.00)
>DroSec_CAF1 21729 120 - 1
CAAACGGCGGGAAUAAAGCGCUUACCCUAAAAUCAAUGCCAACCGUGCUGAGGAAAUAGCUCGGCACAUAGCGACCAUCGCGGAAACGGAUCAAAAGUGAGGUCUUGCCCACUCCCGAAU
.......(((((.....((((................)).....((((((((.......))))))))...))((((.((.((....))))(((....)))))))........)))))... ( -34.79)
>DroSim_CAF1 23248 120 - 1
CAGACGGCGGGAAUAAAGCGCUUACCCUAAAAUCAAUGCCAACCGUGCUGAGGAAAUAGCUCGGCACAUAGCGACCAUCGCGGAAACGGAUCAAAAGUGAGGUCUUGCCCACUCCCGAAU
.......(((((.....((((................)).....((((((((.......))))))))...))((((.((.((....))))(((....)))))))........)))))... ( -34.79)
>DroEre_CAF1 22858 119 - 1
CAAACGG-GGUAAUAAAGCGCUUACCCUAAAAUCAAUGCCAACCGUGCUGAGGAAAUAGCUCGGCACAUAGCGACCAUCGCGGAAACGGAUCAAAAGUGAGGUCUUGCCCACUCCCGAAU
.....((-(((((........)))))))..............((((((((((.......))))))))...(((.....)))))...(((......((((.((.....)))))).)))... ( -35.70)
>consensus
CAAACGGCGGGAAUAAAGCGCUUACCCUAAAAUCAAUGCCAACCGUGCUGAGGAAAUAGCUCGGCACAUAGCGACCAUCGCGGAAACGGAUCAAAAGUGAGGUCUUGCCCACUCCCGAAU
....(((.(((....((((.(((((......(((....((....((((((((.......))))))))...(((.....))))).....))).....)))))).))).)))....)))... (-32.67 = -32.92 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:22 2006