Locus 8068

Sequence ID 3L_DroMel_CAF1
Location 21,262,478 – 21,262,598
Length 120
Max. P 0.500000
window13182

overview

Window 2

Location 21,262,478 – 21,262,598
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -28.77
Consensus MFE -23.43
Energy contribution -23.77
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -1.83
Structure conservation index 0.81
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21262478 120 - 23771897
UAAAAUUGCGGCCUCACGACCAAGUUACUGGGGGAGGUAACUCGUCAAGUUGCAGAUAAAUAUACCCAUAAUAAAGCACAUAUAUUUUGUUUUUUCCUCAGAACGCCUUUGUCGCCGCUU
.......(((((...((((....(((.(((((((((((((((.....))))))(((((((((((................)))).)))))))))))))))))))....)))).))))).. ( -30.49)
>DroSec_CAF1 20540 120 - 1
UCAAAUUGCGGCCUCACGACCAAGUUACUGGAGGAGGUAACUCGUCAAGUUGCAGAUAAAUAUACCCAUAAUAAAGUACAUAUAUUUUAUUUUUUCCUCAGAACGCCUUUGUCGCCGCCU
.......(((((...((((....(((.(((.(((((((((((.....))))))................(((((((((....)))))))))..)))))))))))....)))).))))).. ( -29.40)
>DroEre_CAF1 21737 117 - 1
UCAAAUUGCGGCCUCACGACGCAGUUACUAGGUGAGGUAACUCGUCAAGUUGAA---AAAAAUACACCUAAUAAAGUACAUAUAUUUUAUUUUUUCUUCAGAACGCCUUUGUUGUCGCCU
.......(((((..((.((((.(((((((......)))))))))))...(((((---.((((.......(((((((((....))))))))))))).)))))........))..))))).. ( -26.41)
>consensus
UCAAAUUGCGGCCUCACGACCAAGUUACUGGGGGAGGUAACUCGUCAAGUUGCAGAUAAAUAUACCCAUAAUAAAGUACAUAUAUUUUAUUUUUUCCUCAGAACGCCUUUGUCGCCGCCU
.......(((((...((((....(((.((.((((((((((((.....))))))................(((((((((....)))))))))..)))))))))))....)))).))))).. (-23.43 = -23.77 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:21 2006