Locus 8067

Sequence ID 3L_DroMel_CAF1
Location 21,261,675 – 21,261,795
Length 120
Max. P 0.581875
window13181

overview

Window 1

Location 21,261,675 – 21,261,795
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -49.40
Consensus MFE -47.99
Energy contribution -48.43
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.50
Structure conservation index 0.97
SVM decision value 0.10
SVM RNA-class probability 0.581875
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21261675 120 - 23771897
GAAUAUGGAGGCUGAGGUCAUGUAUUCCGGCAGCAGAGGCUGCUGGGAGAUGGACUGCUGGCGCUGGUGGACAAUCACGCUGGGUCGCCUCUUCGGAUAGCCAUCGUCGUCCGAAUCGUC
((....((((((.((((((.....((((((((((....))))))))))....)))).(..(((.((((.....)))))))..).))))))))(((((..((....))..))))).))... ( -51.90)
>DroSec_CAF1 19734 120 - 1
GAAUAUGGAGGCUGAGGUCAUGUAUUCCGGCAGCAGGGGCUGCUGAGAGAUGGACUGCUGGCGCUGGUGGACAAUCACGCUGGGUCGCCUCUUCGGAUAGGCAUCGUCGUCCGAAUCGUC
((....((((((.((((((.....((((((((((....))))))).)))...)))).(..(((.((((.....)))))))..).))))))))((((((.(((...))))))))).))... ( -46.20)
>DroEre_CAF1 20956 120 - 1
GAAUAUGGAGGCAGAGGUCAUGUAUUCCGGCAGCAGAGGCUGCUGGGAGAUGGACUGCUGGCGCUGGUGGACAAUCACGCUGGGUCGUCUCUUCGGAUAGCCAUCGUCGUCCGAAUCGUC
((....((((((((.((((.....((((((((((....))))))))))....)))).))(((.(..(((........)))..))))))))))(((((..((....))..))))).))... ( -50.10)
>consensus
GAAUAUGGAGGCUGAGGUCAUGUAUUCCGGCAGCAGAGGCUGCUGGGAGAUGGACUGCUGGCGCUGGUGGACAAUCACGCUGGGUCGCCUCUUCGGAUAGCCAUCGUCGUCCGAAUCGUC
((....((((((...((((.....((((((((((....))))))))))....)))).(..(((.((((.....)))))))..)...))))))(((((..((....))..))))).))... (-47.99 = -48.43 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:20 2006