| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,261,515 – 21,261,635 |
| Length | 120 |
| Max. P | 0.883238 |
| Location | 21,261,515 – 21,261,635 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -47.82 |
| Consensus MFE | -46.20 |
| Energy contribution | -46.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21261515 120 + 23771897 GUCGGGCUCCCGCAAGCCCUCCAUUUCGGUGGCCACCCCAACGCCGUUGGCCAGUGGAUCCCCCACUCGCCGGGAGUCCCUGGUCAAGCCCACCUGGCAGCACAUCACACCCGGCCAGCU ...(((((......)))))........(.(((((............((((((((.(((..(((........)))..)))))))))))(((.....)))..............))))).). ( -46.90) >DroSec_CAF1 19574 120 + 1 GUCGGGCUCGCGCAAGCCCUCCAUUUCGGUGGCCACCCCAUCGCCGUUGGCCAGUGGAUCCCCCACUCGCCGGGAGUCCCUGGUCAAGCCCACCUGGCAGCACAUCACACCCGGCCAGCU ...((((..((....)).........((((((.....))))))...((((((((.(((..(((........)))..)))))))))))))))..(((((...............))))).. ( -47.56) >DroEre_CAF1 20796 120 + 1 AUCGGGCUCCCGCAAGCCCUCCAUUGCGUUGGCCACCCCCUCGCCGUUGGCCAGUGGAUCCCCCACUCGUCGGGAGUCCCUGGUCAAGCCCACCUGGCAGCACAUUACACCCGGCCAGCU ...(((((......)))))........(((((((............((((((((.(((..(((........)))..)))))))))))(((.....)))..............))))))). ( -49.00) >consensus GUCGGGCUCCCGCAAGCCCUCCAUUUCGGUGGCCACCCCAUCGCCGUUGGCCAGUGGAUCCCCCACUCGCCGGGAGUCCCUGGUCAAGCCCACCUGGCAGCACAUCACACCCGGCCAGCU ...(((((......)))))........(.(((((............((((((((.(((..(((........)))..)))))))))))(((.....)))..............))))).). (-46.20 = -46.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:19 2006