Locus 8065

Sequence ID 3L_DroMel_CAF1
Location 21,259,986 – 21,260,095
Length 109
Max. P 0.885106
window13179

overview

Window 9

Location 21,259,986 – 21,260,095
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 87.69
Mean single sequence MFE -40.45
Consensus MFE -31.96
Energy contribution -33.40
Covariance contribution 1.44
Combinations/Pair 1.09
Mean z-score -2.04
Structure conservation index 0.79
SVM decision value 0.93
SVM RNA-class probability 0.885106
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21259986 109 + 23771897
GGUUGCAGAUGGCGUGGGAUGGAUGGAUGGUGGAGUUCACCGGGAUCUGCUGGUCCCAUAACUUCGAUAAACCAGCUUCGAACGCCUCAAUCCCACCCCAAAUCAGCCA
(((((.(..(((.(((((((.((.((..((((.....))))((((((....)))))).....(((((..........)))))..)))).))))))).)))..)))))). ( -43.80)
>DroSec_CAF1 18060 105 + 1
GGUUGCAGAUGGCGUGGGAUG----GAUGGCGGAGUUCGCCGGGAUCCGCUGGUCCCAUAACUUCGGUAAACCAGCCUCGAACGCUUCAAUCCCACCCCAAAUCAGCCA
(((((.(..(((.(((((((.----((.(((((((((....((((((....))))))..))))))(((......)))......))))).))))))).)))..)))))). ( -43.40)
>DroSim_CAF1 17875 105 + 1
GGUUGCAGAUGGCGUGGGAUG----GAUGGCGGAGUUCGCCGGGAUCCGCUGGUCCCAUAACUUCGAUAAACCAGCCUCGAACGCCUCAAUCCCACCCCAAAUCAGCCA
(((((.(..(((.(((((((.----((.((((.........((((((....)))))).....(((((..........))))))))))).))))))).)))..)))))). ( -43.60)
>DroEre_CAF1 19354 105 + 1
GGUGGCAGUGGGCGUGGGUCG----GACGGCUGAAUUCUCCGGGAUCUACAGCUCCCUUAACUUCGAUAAACCAGCUUCGAAUGGCUCAAUCCCACCCCAAAUCAGGCA
(((((...((((((((((((.----..(((..(....).))).)))))))............(((((..........)))))..)))))...)))))((......)).. ( -31.00)
>consensus
GGUUGCAGAUGGCGUGGGAUG____GAUGGCGGAGUUCGCCGGGAUCCGCUGGUCCCAUAACUUCGAUAAACCAGCCUCGAACGCCUCAAUCCCACCCCAAAUCAGCCA
(((((....(((.(((((((.....((.((((.........((((((....)))))).....(((((..........))))))))))).))))))).)))...))))). (-31.96 = -33.40 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:17 2006