| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,259,371 – 21,259,462 |
| Length | 91 |
| Max. P | 0.666790 |
| Location | 21,259,371 – 21,259,462 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 92.12 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -16.92 |
| Energy contribution | -18.30 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21259371 91 - 23771897 UUCCCCUUAUGCAAAUAUGAAAAAUGAUAUUCAAAAAGUUGACCCUUUUCCACCAGCGUGACCCCGCUCGCGGGUCAAUGAGGUGUCAAUC .................((((........))))....((((((((((....(((.(((.(......).))).)))....)))).)))))). ( -19.90) >DroSec_CAF1 17377 91 - 1 UUCCCCGUAUGCAAAUAUGACAAAUGAUAUUCAAAAAGUUGACCCUUUUUCACCCGCCGCACCCCGCUCUCGGGUCAAUGAGGUGUCAAUC .....(((((....)))))..................((((((((((.((.(((((..((.....))...))))).)).)))).)))))). ( -23.20) >DroSim_CAF1 17195 91 - 1 UUCCCCGUAUGCAAAUAUGACAAAAGAUAUUCAAAAAGUUGACCCUUUUUCACCCGCCGCACCCCGCUCGCGGGUCAAUGAGGUGUCAAUC .....(((((....)))))..................((((((((((.((.((((((.((.....))..)))))).)).)))).)))))). ( -27.00) >DroEre_CAF1 18747 91 - 1 UUGCCCUUAUGCAAAUAUGACAAAUGAUAUUCAAAAAGUUGACCCUUUUUCACCCAUCUAACCCGGCUCGCGGGUCAAUGAGGUGUCAAUC ((((......))))...((((...........((((((......)))))).((((((...(((((.....)))))..))).)))))))... ( -19.70) >consensus UUCCCCGUAUGCAAAUAUGACAAAUGAUAUUCAAAAAGUUGACCCUUUUUCACCCGCCGCACCCCGCUCGCGGGUCAAUGAGGUGUCAAUC .....(((((....)))))..................((((((((((.((.((((((............)))))).)).)))).)))))). (-16.92 = -18.30 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:16 2006