Locus 8061

Sequence ID 3L_DroMel_CAF1
Location 21,255,220 – 21,255,314
Length 94
Max. P 0.718026
window13172

overview

Window 2

Location 21,255,220 – 21,255,314
Length 94
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -27.98
Consensus MFE -16.90
Energy contribution -17.10
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -1.84
Structure conservation index 0.60
SVM decision value 0.39
SVM RNA-class probability 0.718026
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21255220 94 + 23771897
UUUUUACUCCGCUAAAUAGGCAACAUAUUGUUCGG-GUAAUCGCCGGAGAUUUUCUAUUUUUGGCGGGC------------------------AUGCUGAAAUCCCCCAAAUUGAUUUU
...((((.(((...(((((....).))))...)))-))))..(((((((((.....)))))))))(((.------------------------((......)).)))............ ( -23.00)
>DroPse_CAF1 11524 119 + 1
GCAUUUCGCGGCUAAAUAGGCAACAUAUUGUCUGGUGUAAUCGCCGGGGAUUUUCUAUUUUCGGCAGGCCCACCCGUACGAGUACACCUACUCGUGCGUAAAUCCCUCAAAUUGAUUUU
((.....))((((...(((((((....)))))))........((((..(((.....)))..)))).))))....((((((((((....))))))))))..................... ( -38.20)
>DroSec_CAF1 13394 94 + 1
UUUUUAUUCCGCUAAAUAGGCAACAUAUUGUUCGG-GUAAUCGCCGGAGAUUUUCUAUUUUUGGCGGGC------------------------AUGCUGAAAUCCCGCAAAUUGAUUUU
.......((((...(((((....).))))...)))-).(((((((((((((.....)))))))))(((.------------------------((......))))).......)))).. ( -22.50)
>DroSim_CAF1 12905 94 + 1
UUUUUACUCCGCUAAAUAGGCAACAUAUUGUUCGG-GUAAUCGCCGGAGAUUUUCUAUUUUUGGCGGGC------------------------AUGCUGAAAUCCCCCAAAUUGAUUUU
...((((.(((...(((((....).))))...)))-))))..(((((((((.....)))))))))(((.------------------------((......)).)))............ ( -23.00)
>DroEre_CAF1 14289 94 + 1
UUUUUACUCCGCUAAAUAGGCAACAUAUUGUUCGG-GUAAUCGCCGGAGAUUUUCUAUUUUUGGCGGGC------------------------AUGCUGAAAUCCCCCAAAUUGAUUUU
...((((.(((...(((((....).))))...)))-))))..(((((((((.....)))))))))(((.------------------------((......)).)))............ ( -23.00)
>DroPer_CAF1 11535 119 + 1
GCAUUUCGCGGCUAAAUAGGCAACAUAUUGUCUGGUGUAAUCGCCGGGGAUUUUCUAUUUUCGGCAGGCCCACCCGUACGAGUACACCUACUCGUGCGUAAAUCCCUCAAAUUGAUUUU
((.....))((((...(((((((....)))))))........((((..(((.....)))..)))).))))....((((((((((....))))))))))..................... ( -38.20)
>consensus
UUUUUACUCCGCUAAAUAGGCAACAUAUUGUUCGG_GUAAUCGCCGGAGAUUUUCUAUUUUUGGCGGGC________________________AUGCUGAAAUCCCCCAAAUUGAUUUU
...((((.(((...(((((....).))))...))).))))(((((((((((.....))))))))))).................................................... (-16.90 = -17.10 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:11 2006