Locus 8060

Sequence ID 3L_DroMel_CAF1
Location 21,254,113 – 21,254,230
Length 117
Max. P 0.555908
window13171

overview

Window 1

Location 21,254,113 – 21,254,230
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.54
Mean single sequence MFE -48.50
Consensus MFE -36.33
Energy contribution -36.20
Covariance contribution -0.13
Combinations/Pair 1.25
Mean z-score -1.50
Structure conservation index 0.75
SVM decision value 0.04
SVM RNA-class probability 0.555908
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21254113 117 - 23771897
CAUACAUCUGCAUUGCCUCGCGGGAGGGACGAUAGCCAGGAUAUCCGGUGGCCGAGCGCUGAACGGGCGCCAUGAUAGCAUCGUCGUGGUAGUGAUGGCU---GCCCGUCAAACUCAGCU
.........((....((((....))))..((...(((.((....)))))...)).))(((((((((((((((((((......))))))))(((....)))---)))))).....))))). ( -42.10)
>DroPse_CAF1 10737 120 - 1
CGUACAUCUGAAGAGCUUCUCGUGAGGGUCGAUAGCCCGGAUAUCCGGUGGCCGUCCGCUGCACGGGCGCCAUAAUGGCGUCGUCAUGAUAAUGAUGGCUGCUGCCCGUGAGGCUCUGUU
...........((((((((.((.((.(((((.....((((....))))))))).))))....(((((((((.....)))((((((((....))))))))....))))))))))))))... ( -54.50)
>DroEre_CAF1 13227 117 - 1
CAUACAUCUGCAUUGCCUCGCGGGAGGGACGAUAGCCAGGAUAUCCGGUGGCAGAACGCUGGACGGGCGCCAUGAUGGCAUCGUCGUGGUAGUGAUGGCU---UCCUGUCAAGCUCUGCU
.........(((..((...((((((((.......(((......(((((((......)))))))..)))(((((((((....)))))))))........))---))))))...))..))). ( -44.60)
>DroPer_CAF1 10754 120 - 1
CGUACAUCUGAAGAGCUUCUCGUGAAGGUCGAUAGCCCGGAUAUCCUGUGGCCGUCCGCUGCACGGGCGCCAUAAUGGCGUCGUCAUGAUAAUGAUGGCUGCUGCCCGUGAGGCUCUGUU
...........((((((((.((((..(((.((..((((((.....))).)))..)).))).)))(((((((.....)))((((((((....))))))))....))))).))))))))... ( -52.80)
>consensus
CAUACAUCUGAAGAGCCUCGCGGGAGGGACGAUAGCCAGGAUAUCCGGUGGCCGACCGCUGCACGGGCGCCAUAAUGGCAUCGUCAUGAUAAUGAUGGCU___GCCCGUCAAGCUCUGCU
............((.((((....)))).))....(((.((....))...))).....(((.((((((((((.....)))((((((((....))))))))....))))))).)))...... (-36.33 = -36.20 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:10 2006