| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,420,733 – 2,420,835 |
| Length | 102 |
| Max. P | 0.509990 |
| Location | 2,420,733 – 2,420,835 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 88.41 |
| Mean single sequence MFE | -31.08 |
| Consensus MFE | -29.17 |
| Energy contribution | -29.28 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.94 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2420733 102 + 23771897 UGCGUGGAGUGCAAUUCGCAGCGGCAGCCGGUG--UUUGGUUCCAUCAAUUAUAAUGUGAUAUAUCAAAGCGAAUGGCACAUUGACGCUGUUGUCGCUGUC------UCC .....((((........(((((((((((.((((--((((((...)))))...(((((((.(((.((.....))))).))))))))))))))))))))))))------))) ( -31.90) >DroSec_CAF1 53876 102 + 1 UGCGUGGAGUGCAAUUCGCAGCGGCAGCCGGUG--UUUGGUUCCAUCAAAUAUAAUGUGAUAUAUAAAAGCGAAUGGCACAUUGACGCUGUUGUCGCUGUC------UCC .....((((........(((((((((((.((((--((((((...)))))...(((((((...(((........))).))))))))))))))))))))))))------))) ( -31.50) >DroSim_CAF1 47816 102 + 1 UGCGUGGAGUGCAAUUCGCAGCGGCGGCCGGUG--UUUGGUUCCAUCAAUUAUAAUGUGAUAUAUCAAAGCGAAUGGCACAUUGACGCUGUUGUCGCUGUC------UCC .....((((........(((((((((((.((((--((((((...)))))...(((((((.(((.((.....))))).))))))))))))))))))))))))------))) ( -31.10) >DroEre_CAF1 47555 102 + 1 UGCGUGGAGUGCAAUUUGCAGCGGCAGCCGGUG--UUUGGUUCCAUCAAUUAUAAUGUGAUAUUUCAAAGCGAAUGGCACAUUGACGCUGUUGUUGCUGUC------UCC .....((((.(((....(((((((((((.((((--........)))).....(((((((.(((((......))))).)))))))..)))))))))))))))------))) ( -33.40) >DroYak_CAF1 48778 91 + 1 UGCGUGGAGUGCAAUUCGCAGCGGCAGCCGGUG--UUUGGUUCCAUCAAUUAUAAUGUGAUAUAUCAAAGCGAAUGGCACGUUGACGCUGUUG----------------- .((((.((((((.((((((...((.(((((...--..)))))))((((.........))))........)))))).)))).)).)))).....----------------- ( -29.40) >DroAna_CAF1 41566 110 + 1 UGCGUGGAGUGCAAUUCGCAGCGGCACCCGGCGGACUCGGCCCCAUCAAUUAUAAUGCGAUAUAUCACAGCGAAUGGCACAUUGACGCCGUUGUCUCUAUCCAUCCAUCC ((.(((((((((.((((((.((((...))((.((......))))............))((....))...)))))).))))...((((....))))....))))).))... ( -29.20) >consensus UGCGUGGAGUGCAAUUCGCAGCGGCAGCCGGUG__UUUGGUUCCAUCAAUUAUAAUGUGAUAUAUCAAAGCGAAUGGCACAUUGACGCUGUUGUCGCUGUC______UCC .((((.((((((.((((((...((.((((((.....))))))))((((.........))))........)))))).)))).)).))))...................... (-29.17 = -29.28 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:39 2006