Locus 8059

Sequence ID 3L_DroMel_CAF1
Location 21,253,815 – 21,253,934
Length 119
Max. P 0.884355
window13170

overview

Window 0

Location 21,253,815 – 21,253,934
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 93.56
Mean single sequence MFE -51.80
Consensus MFE -46.74
Energy contribution -47.63
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -2.31
Structure conservation index 0.90
SVM decision value 0.93
SVM RNA-class probability 0.884355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21253815 119 - 23771897
UCCUCGAUCCUGGCCUGGGUGGUCUCCGCAUCCUCGAAGACGUCGUCGCUCAUGCUGCUGGCGUCGUCGGGAUGCGCUGAUCCCGCUGGCGGUCCUCCCGCCCCGGGGUCACCUUCGCC
.....((((((((....((.((((..(((((((.(((.((((((((.((....)).)).)))))).))))))))))..))))))...(((((.....)))))))))))))......... ( -60.30)
>DroSim_CAF1 11949 119 - 1
UCCUCGAUCCUGGCCUGGGUGGUCUCCGCAUCCUCGAAGACGUCGUCGCUCAUGCUGCUGGCGUCGUCGGGAUGCGCUGAUCCCGCUGGCGCUCCUCCUGCCCCUGGGCCACCUUCACC
.....((...(((((..((.((((..(((((((.(((.((((((((.((....)).)).)))))).))))))))))..)))).....((((.......))))))..)))))...))... ( -55.30)
>DroEre_CAF1 12923 119 - 1
UCCUCGAUCCUCGCCUGGGUGGUCUUCGCAUCCUCGAAGACAUCGUCGCUCAUGCUGCUCGCGUCGUCGGGAUGCGCUGAUCCCGCCGGCGUUCCUCCUGCCCCUGGACCACCUUCACC
.....((....((((.(((.((((..(((((((.(((.(((...((.((....)).))....))).))))))))))..)))))).).)))).)).(((.......)))........... ( -39.80)
>consensus
UCCUCGAUCCUGGCCUGGGUGGUCUCCGCAUCCUCGAAGACGUCGUCGCUCAUGCUGCUGGCGUCGUCGGGAUGCGCUGAUCCCGCUGGCGCUCCUCCUGCCCCUGGGCCACCUUCACC
.....((...(((((..((.((((..(((((((.(((.((((((((.((....)).)).)))))).))))))))))..)))).....((((.......))))))..)))))...))... (-46.74 = -47.63 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:09 2006