Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,229,474 – 21,229,594 |
Length | 120 |
Max. P | 0.547686 |
Location | 21,229,474 – 21,229,594 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.06 |
Mean single sequence MFE | -45.80 |
Consensus MFE | -34.09 |
Energy contribution | -36.15 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.46 |
Structure conservation index | 0.74 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547686 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21229474 120 + 23771897 CGCUGAUAAGACCUCUUUUGGUUUCAGCUAAUUGGUAUGGUGCUUUUGGCCCUGAUUUGGGUGGAGGUGGAUGCCCGUCUGGUGAGAGUCCGCCGGAUCCGGAGAUUGGUCGGAGCCAGU .(((((...((((......))))))))).........((((...(((((((....(((((((...(((((((.(((....)).)...)))))))..)))))))....))))))))))).. ( -42.50) >DroSim_CAF1 96586 120 + 1 CGCUGAUAAGACCUCUUUUGGUUUCAGCUAAUUGGCAUCGUGCUUUUGGCCCUGAUUUGGGUGGAGGUAGAUGCCCGUCUUGUGAGGGUCCGCCGGAUCCGGAGAUUGGUCGGCGCCAGU .(((((...((((......)))))))))..(((((((((.(((((.(.((((......)))).)))))))))(((.(((((....((((((...)))))).))))).)))....)))))) ( -45.80) >DroEre_CAF1 49070 114 + 1 GGCUGAUAAGACCUCU------UUCAGCUAAUUGGCCUUUUCUUGUUGGCCCUCAUUUGGGUGGAGGCUGAUGCCCGCCUGGUGAGGGUUCGCCGGAUCCGGAGAUUGGUCGGCGCCAGU ((((((.(((....))------))))))).((((((...........((((((((.(..(((((..((....)))))))..))))))))).(((((..(((.....)))))))))))))) ( -49.00) >DroYak_CAF1 154016 120 + 1 GGCUGAUAAGACCUCUCUUGGUUUCAGCUAAUUGGCCUGGUGUUUUUGGCCCUGAUUUGGGUGGAGGUCGAUGCCCGUCUGGUGAGGGUUCGCCGGAUCAGAAGAUUGGUCGGCGCCACU (((......(((((((((..(..((((......((((..........)))))))).)..)).)))))))((.((((.((....))))))))((((.(((((....))))))))))))... ( -45.90) >consensus CGCUGAUAAGACCUCUUUUGGUUUCAGCUAAUUGGCAUGGUGCUUUUGGCCCUGAUUUGGGUGGAGGUAGAUGCCCGUCUGGUGAGGGUCCGCCGGAUCCGGAGAUUGGUCGGCGCCAGU .(((((...((((......)))))))))..((((((.........((.((((......)))).))(((((((..((((((((((......)))))))..)))..)))))))...)))))) (-34.09 = -36.15 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:03 2006