Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,226,636 – 21,226,795 |
Length | 159 |
Max. P | 0.946101 |
Location | 21,226,636 – 21,226,756 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.33 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -30.15 |
Energy contribution | -30.90 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.03 |
Mean z-score | -1.73 |
Structure conservation index | 0.91 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.867021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21226636 120 + 23771897 GCAGUUAUUAGCGACGCGAUCUGCUGCGCUCGAAAGUUAAAUUAAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGU .......(((((((.((..((((.((...(((((((((.........((.((((((.....)))))).)).((.....)).)))))))))...)).))))....)).)).)))))..... ( -32.40) >DroSim_CAF1 93739 119 + 1 GCAGUUAAU-GCGACGCGAUCUGCUGCGCUCGAAAGUUAAAUUGAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGU ((..(((((-.(((((((......)))).)))...))))).(((...((.((((((.....)))))).))..)))....(((((((((..(......)..))))))))).))........ ( -31.10) >DroEre_CAF1 46056 119 + 1 GCAGUUAAU-GCGACGCGAGCUGCUGCGUUCGAAAGUUAAGUUAAAACUGGCCAAAAAACAUUUAACCAGGCCGAAAAGGAAGCUUUCGAUGUUUGUAGAGGAAGCUUCAGCUAACCAGU (((.....)-))...(((((((.(((((.(((((((((.(((....)))((((................))))........)))))))))....)))))....)))))..))........ ( -30.89) >DroYak_CAF1 151214 119 + 1 GCAGUUAAU-GCGACGCGAUCUGCUGCGCUCGAAAGUUUAAUUAAAACUGGCCAAAAAACAUUUGGCCAGGCCGAAAAGGAAGCUUUCGAUUUCUACAGAGGAAGCUUCAGCUAACCAGU (((.....)-))((.((..((((..(...((((((((((........(((((((((.....))))))))).((.....))))))))))))...)..))))....)).))........... ( -38.40) >consensus GCAGUUAAU_GCGACGCGAUCUGCUGCGCUCGAAAGUUAAAUUAAAACUGGCCAAAAAACAUUUGACCAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGU (((((.....((...)).....)))))..(((((((((.........(((((((((.....))))))))).((.....)).)))))))))..........((.(((....)))..))... (-30.15 = -30.90 + 0.75)
Location | 21,226,676 – 21,226,795 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -34.65 |
Consensus MFE | -30.26 |
Energy contribution | -31.32 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.07 |
Structure conservation index | 0.87 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21226676 119 + 23771897 AUUAAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGUGGGCUCUCUG-GAUUCGUUCUCGGAACAUCAGACGUGGAA .......(((((((((.....))))))(((..((((...(((((((((..(......)..)))))))))......((((........)))-).))))..))).......)))........ ( -34.10) >DroSim_CAF1 93778 120 + 1 AUUGAAACUGGUCAAAAAUCAUUUGACGAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGUGGGCUCUCUGGGAUUCGUUCUCGGAACAUCAGACGAGGAA .......(((((((((.....))))))(((.((......(((((((((..(......)..))))))))).(((....))))).)))(((((((.....)))))))....)))........ ( -35.10) >DroEre_CAF1 46095 120 + 1 GUUAAAACUGGCCAAAAAACAUUUAACCAGGCCGAAAAGGAAGCUUUCGAUGUUUGUAGAGGAAGCUUCAGCUAACCAGUGAUCUCUCUGGAAUUCGUUCUCGGAAUAUUAGACGAGGAA .........((((................))))(((...(((((((((..((....))..)))))))))......((((.(....).))))..))).((((((..........)))))). ( -31.79) >DroYak_CAF1 151253 120 + 1 AUUAAAACUGGCCAAAAAACAUUUGGCCAGGCCGAAAAGGAAGCUUUCGAUUUCUACAGAGGAAGCUUCAGCUAACCAGUGAGCUCUCUGGGAUUCGUUCUCGAGAUAUUAGAUGAGGAA .......(((((((((.....))))))))).((......(((((((((............)))))))))..((((((((.(....).))))..((((....))))...))))....)).. ( -37.60) >consensus AUUAAAACUGGCCAAAAAACAUUUGACCAGGCCGAAAAGGAAGCUUUCGAUUUCAAUAGAGGAAGCUUCAGCUAACCAGUGAGCUCUCUGGGAUUCGUUCUCGGAACAUCAGACGAGGAA .......(((((((((.....)))))))))..((((...(((((((((............)))))))))......((((.(....).))))..))))((((((..........)))))). (-30.26 = -31.32 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:02 2006