Locus 8053

Sequence ID 3L_DroMel_CAF1
Location 21,226,322 – 21,226,438
Length 116
Max. P 0.652002
window13161

overview

Window 1

Location 21,226,322 – 21,226,438
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.44
Mean single sequence MFE -31.35
Consensus MFE -23.08
Energy contribution -24.95
Covariance contribution 1.87
Combinations/Pair 1.07
Mean z-score -1.62
Structure conservation index 0.74
SVM decision value 0.25
SVM RNA-class probability 0.652002
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21226322 116 - 23771897
ACCAUGCG----CUCAGAUUGUGGUAUUCCUGGUCCUAGUCCUAGUUCAACUAAUCCAUUGUACGCGCUUUACUGCGCCAUCUUUGGACAGGACCAUCUACUACCGGAAUACGCCACCCG
........----........(((((((((((((((((.((((..((.(((........))).))((((......)))).......))))))))))).........)))))..)))))... ( -35.10)
>DroSim_CAF1 93423 116 - 1
ACCACCCG----CUCAGAUUGUGGUAUUCCUGAUCCUAAUCCUAGUUCAACUAAUUCAUUGUACGCGCUUUACUGCGCCAUCUUUGGACAGGACCAUCUACUACCGGAAUACGCCACCCG
........----........(((((..(((((.(((........((.(((........))).))((((......)))).......))))))))...(((......)))....)))))... ( -25.00)
>DroEre_CAF1 45742 116 - 1
AUCGCCCG----AUCAGCUUGUGGCAUUCCUGGUCCUAGUCCUAGUUCACCUAACCCAUGGUACGGACAUUACUGCACCGUCUUUGGACAGGACCAUCUACUACCGGAAUACGCCACCCG
........----........(((((((((((((((((.(((((((.....)))....(((((.(((......))).)))))....))))))))))).........)))))..)))))... ( -34.60)
>DroYak_CAF1 150895 120 - 1
ACCACCCGAUCGAUCAGAUUGUGGUAUUCCUGGUCCUGGUCCUAGUUCACCUAAAGCAUUGUGCGGCUUUUACUUCGGCAUCUUUGGAAAGGACUAUCUACUACCGGAAUACGCCACCCG
....(.(((((.....))))).)(((((((.(((..(((...((((((..((((((....((((.(.........).))))))))))...)))))).)))..))))))))))........ ( -30.70)
>consensus
ACCACCCG____AUCAGAUUGUGGUAUUCCUGGUCCUAGUCCUAGUUCAACUAAUCCAUUGUACGCGCUUUACUGCGCCAUCUUUGGACAGGACCAUCUACUACCGGAAUACGCCACCCG
....................(((((((((((((((((.(((((((.....)))...........((((......)))).......))))))))))).........)))))..)))))... (-23.08 = -24.95 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:00 2006