Locus 8052

Sequence ID	3L_DroMel_CAF1
Location	21,224,048 – 21,224,153
Length	105
Max. P	0.593734

overview

Window 0

Location	21,224,048 – 21,224,153
Length	105
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	87.29
Mean single sequence MFE	-11.38
Consensus MFE	-7.93
Energy contribution	-8.05
Covariance contribution	0.12
Combinations/Pair	1.12
Mean z-score	-1.62
Structure conservation index	0.70
SVM decision value	0.12
SVM RNA-class probability	0.593734
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21224048 105 + 23771897
--------CUCCAGAUUCACACCCAAAACAAACAAACACAGGCCGCAAACACGCCCAAAUAUAUGCAUGCACGUAUAUAUGUCAAGCAACUUGAAAUAUAUAAUUGUAAAGAA-
--------.......(((......................((.((......)).))...........((((..(((((((.(((((...))))).)))))))..))))..)))- ( -14.60)
>DroSim_CAF1 91086 105 + 1
--------CUCCAGAUUCACACCCAAAACAAACAAACACAGGCCGCAAACACACCCAGAUAUAUACACUCACGUAUAUAUGUCAGGCAACUUGAAAUAUAUAAUUGUAAAAAA-
--------.................................((((......).....((((((((.((....)).)))))))).)))..........................- ( -11.20)
>DroEre_CAF1 43471 109 + 1
GAUUCCAUAUCCAGAUUCACACCCAAAACAAACAAACCCAGGCCACAAACACACCGAGAUAUAUACAUAC----AUAUAUGUCAAGCAACUUGAAAUAUAUAAUUGUAAAGAA-
((.((........)).)).............................................((((...----((((((.(((((...))))).))))))...)))).....- ( -10.20)
>DroYak_CAF1 148626 102 + 1
--------CUCCAGAUACACACCCAAAACAAACAAACCCAGGCCACAAACACACCCAGAUAUAUACAUAC----AUAUAUGUCAAGCAACUUGAAAUAUAUAAUUGUAAAGAAA
--------.......................................................((((...----((((((.(((((...))))).))))))...))))...... (  -9.50)
>consensus
________CUCCAGAUUCACACCCAAAACAAACAAACACAGGCCACAAACACACCCAGAUAUAUACAUAC____AUAUAUGUCAAGCAACUUGAAAUAUAUAAUUGUAAAGAA_
...............................................................((((......(((((((.(((((...))))).)))))))..))))...... ( -7.93 =  -8.05 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:59 2006