Locus 8051

Sequence ID 3L_DroMel_CAF1
Location 21,223,696 – 21,223,816
Length 120
Max. P 0.512030
window13159

overview

Window 9

Location 21,223,696 – 21,223,816
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -31.21
Consensus MFE -28.15
Energy contribution -27.52
Covariance contribution -0.62
Combinations/Pair 1.10
Mean z-score -1.40
Structure conservation index 0.90
SVM decision value -0.04
SVM RNA-class probability 0.512030
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21223696 120 + 23771897
AUUCGGUCCGUUUCGCACUAGGCUGCCAGGGAUCUCAAGCCAGAUCUCUUUGGUUGCCUCUUAAAUAUCGUAUCUAGGUUUAGUAAUAGUAUAGACAAAACUGCAAGAUGAAAGCGACAA
............((((...((((.(((((((((((......)))))))..)))).))))...........(((((.(((((.((..........)).)))))...)))))...))))... ( -29.50)
>DroSim_CAF1 90733 120 + 1
AUUCGGUCCGUUUCGCACUCGGCUGCCAGGGAUCUCAAGCCAGAUCUCUUUGGUUGCCUCUUAAAUAUCGUAUCUAGGUUUAGUAAUAGUAUAGACAAAACUACAAGAUGAAAGCGACAA
............((((....(((.(((((((((((......)))))))..)))).)))............(((((.(((((.((..........)).)))))...)))))...))))... ( -28.00)
>DroEre_CAF1 43115 119 + 1
AUUCGGUCCGUUUCGCAUUCGGCUGCCAGGGAUCUCUACCCAGAUCUCUUUGGUUGCCUCUUAAAAAUCGUGUCUAGGUUUAGUAAUAGUAUAGACAA-ACUACAAGAUGAAAACGACAA
.....(((..(((((.....(((.(((((((((((......)))))))..)))).)))((((........((((((...(((....)))..)))))).-.....)))))))))..))).. ( -32.14)
>DroYak_CAF1 148272 120 + 1
AUUCGGUCCGUUUCGCACUAGGCUGCCAGGGAUCUCAACUCAGAUCUCUUUGGCUGCCUCGUAAAAAUCGUGUCUAGGUUUAGUAAUAGUAUAGACAAAACUACAAGAUGAAAGCGACAA
.....(((..((((((((.((((.(((((((((((......)))))))..)))).)))).))........((((((...(((....)))..)))))).........).)))))..))).. ( -35.20)
>consensus
AUUCGGUCCGUUUCGCACUAGGCUGCCAGGGAUCUCAACCCAGAUCUCUUUGGUUGCCUCUUAAAAAUCGUAUCUAGGUUUAGUAAUAGUAUAGACAAAACUACAAGAUGAAAGCGACAA
.....(((..((((((....(((.(((((((((((......)))))))..)))).)))...........(((.....(((((.........))))).....)))..).)))))..))).. (-28.15 = -27.52 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:58 2006