| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,215,808 – 21,215,921 |
| Length | 113 |
| Max. P | 0.820760 |
| Location | 21,215,808 – 21,215,921 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 89.76 |
| Mean single sequence MFE | -23.07 |
| Consensus MFE | -20.41 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21215808 113 - 23771897 UAUUUAUUUGCAUGUUUAUAACGAUAUAAGUGUACAGCUGUAAAUAUAUAAAGCCGUUCUAGUUCCGCAGUGGAAUGGUAUUUGUUUAUAUAUGCUAAUUUGUUUUUUUUUUU .........((((((....(((((((((.((.(((....))).)).))))..(((((((((.(.....).)))))))))..)))))...)))))).................. ( -21.40) >DroSim_CAF1 82895 106 - 1 UAUUUAUUUGCAUGUUUAUAACAAUAUAAGUGUACAGCUGUAAAUAUAUAAAGCCGUUCUAGUUCCGCAGUGGAAUGGUAUUUGUUUAUAUAUGCUAAUUUGUUUU------- .........((((((....(((((((((.((.(((....))).)).))))..(((((((((.(.....).)))))))))..)))))...))))))...........------- ( -21.70) >DroEre_CAF1 35291 105 - 1 UAUUUAUUUGCAUGUUUAUAACAAAAUAGGUGUACAGUUGUAAAUAUAUAACGCCGUUCUAGUUCCACAGUGGAAUGGUAUUUGUUUAUAUAUGUAAAUUAGU-UU------- .(((.((((((((((....((((((...........((((((....))))))(((((((((.(.....).))))))))).))))))...)))))))))).)))-..------- ( -26.10) >consensus UAUUUAUUUGCAUGUUUAUAACAAUAUAAGUGUACAGCUGUAAAUAUAUAAAGCCGUUCUAGUUCCGCAGUGGAAUGGUAUUUGUUUAUAUAUGCUAAUUUGUUUU_______ .........((((((....(((((((((.((.(((....))).)).))))..(((((((((.(.....).)))))))))..)))))...)))))).................. (-20.41 = -20.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:44 2006