Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,214,181 – 21,214,301 |
Length | 120 |
Max. P | 0.568980 |
Location | 21,214,181 – 21,214,301 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -24.15 |
Energy contribution | -23.15 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -1.47 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21214181 120 + 23771897 UGUCCGCUCUCUUAAUCUUCUGUUGAGUGACUUCUUAUCUUUGAGCAACUCUCAACACGUUUUCUCUUCGGUCUUUUGGUCUUAUCACCUAGAAGGUUUCCAUGGGGGAGCAGACGACGU .(((.((((((((((((((((((((((.(....((((....))))...).)))))).............(..(....)..).........))))))).....))))))))).)))..... ( -33.10) >DroSim_CAF1 81245 120 + 1 UGUCCGCUCUCUUAAUCUUCUGUUGAGUGACUUCUUAUCUUUGAGCAACUCUCAGCACGUUUUCUCUUCGGAUUUUUGGUCUUAUCACCUAGAAGGUUUCCAUGGGGGAGCAGACGACGU .(((.(((((((((((((((((.(((..((((....((((..(((.(((.........)))..)))...))))....))))...)))..)))))))).....))))))))).)))..... ( -34.30) >DroEre_CAF1 33847 99 + 1 U--------------------GUUGAGUGAGUUCUUAUCUUUGAGUAACUCUCAGCACGUU-UCUCUUCGCUCAUUUGGUCUUAUCGCCUAGACGGUUUCCAUGGGGGAGCAGGCGAUGU (--------------------(((((..(((((((((....)))).)))))))))))....-....................((((((((.....((((((....)))))))))))))). ( -29.00) >DroYak_CAF1 140542 99 + 1 U--------------------GUUGAGUGAAUUCUUAUCAUUGAGCAACUCUUAACACGUU-UCUCUUCGGUCUUCUGCUCUUAUCGCCUAGAAGGUUUCCAUGGGGGAGCAGGCGACGU (--------------------((((((.(....((((....))))...).)))))))((..-......))(((.((((((((.....((((...((...)).)))))))))))).))).. ( -25.30) >consensus U____________________GUUGAGUGACUUCUUAUCUUUGAGCAACUCUCAACACGUU_UCUCUUCGGUCUUUUGGUCUUAUCACCUAGAAGGUUUCCAUGGGGGAGCAGACGACGU .....................((((((.(....((((....))))...).))))))(((((.(((.......((((((((......))).)))))((((((....))))))))).))))) (-24.15 = -23.15 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:40 2006