Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,213,022 – 21,213,124 |
Length | 102 |
Max. P | 0.838912 |
Location | 21,213,022 – 21,213,124 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 83.06 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -16.28 |
Energy contribution | -17.00 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.23 |
Mean z-score | -2.15 |
Structure conservation index | 0.67 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21213022 102 - 23771897 UAGCACUCCU-UUGUAUAAUUUAAAUACAUAUGUGCACAAGGAUGCAGCUCAAUGGCACAUCCCACCUGCCAUCGA--UUUUGG-----UUGAAGAAUCUUCCCUUAUUA ..(((.((((-(((((((.............)))))).))))))))......((((((.........)))))).((--((((..-----....))))))........... ( -21.52) >DroSec_CAF1 33358 102 - 1 UAGCACUCCU-UUGCUUAAUUUAAAUACAUAUGUGCACAAGGAUGCAGUUCCGUGGCACGUCCCACCUGCCAUCGA--UUUUGG-----UUGGGGAAUCUUCCCUUAUUA ..(((.((((-((((...................))).))))))))...((.((((((.(.....).)))))).))--...(((-----(.(((((....))))).)))) ( -26.61) >DroSim_CAF1 80089 101 - 1 UAGCACUCCU-UUGCAUAAUUUAAAUACAUAUG-GCACAAGGAUGCAGCUCCAUGGCACGUCCCACCUGCCAUCGA--UUUUGG-----UUGGGGAAUCUUCCCUUAUUA ..(((.((((-(((((((...........))).-))).))))))))...((.((((((.(.....).)))))).))--...(((-----(.(((((....))))).)))) ( -25.80) >DroEre_CAF1 32693 99 - 1 UAGCACUCCUUUUGCAUAAUUUAAAU----AUGUUCUCAAGGAUGCAACUUAAUGGCACAUCUCACCUGCCAUCGA--UUUUGG-----UUGGGAACUUUUUCCUUAUUA ..(((.(((((..(((((.......)----))))....))))))))...(..((((((.........))))))..)--...(((-----(.(((((....))))).)))) ( -21.80) >DroYak_CAF1 139658 104 - 1 UAGCUCUACUUUUGCAUAAUUUAUAU----AUGUGCACAAGGAUGCAACUCGGUGGCAC--CUCACCUGCCAUCGGACUUUUCGAACUUUUGGGAACUUUUCCCCUAUUA ..((....(((.((((((........----.)))))).)))...))...(((((((((.--......)))))))))...............((((.....))))...... ( -26.50) >consensus UAGCACUCCU_UUGCAUAAUUUAAAUACAUAUGUGCACAAGGAUGCAGCUCAAUGGCACAUCCCACCUGCCAUCGA__UUUUGG_____UUGGGGAAUCUUCCCUUAUUA ..(((.((((..((((((.............))))))..)))))))...((.((((((.........)))))).))...............(((((....)))))..... (-16.28 = -17.00 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:37 2006