| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,200,849 – 21,200,961 |
| Length | 112 |
| Max. P | 0.789731 |
| Location | 21,200,849 – 21,200,961 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.82 |
| Mean single sequence MFE | -39.92 |
| Consensus MFE | -28.20 |
| Energy contribution | -28.48 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21200849 112 - 23771897 UUUUUAA--UACUC-----CAGCCUACGGGUCCUGGGUUCGGCAGCUCUCAAUAUGUCGAUGGUUGCUUUGGGAGCCGCCGACGCUAACUAUGAAUUUGGAAUUCACGCCUGGGAUGUG .......--.....-----.......((.((((..((((((((.((((((((...((........)).)))))))).))))).........(((((.....))))).)))..)))).)) ( -36.90) >DroVir_CAF1 45294 111 - 1 CAUCUUA--UACU------UAGAUUGCGUGUGCUGGGAUCAGCGGCUUUGAAUAUGGCUAUGGUGGCGCUUGGCGCUGCCGAUGCCAACUACGAAUUCGGCAUCCAUGCCUGGGACGUC .......--..((------(((...(((((.((((....))))((((........))))..((..((((...))))..))((((((............))))))))))))))))..... ( -37.20) >DroPse_CAF1 40689 117 - 1 --UUCAAUUUUCUUUCGAAUAGUUUGCGCGUCCUGGGCUCUGCUGCCCUGAACAUGUGCAUGGUGGCUCUGGGCGCCGCAGAUGCCAAUUACGAGUUUGGCAUCCAUGCCUGGGAUGUG --........................(((((((..(((((((((((((.((.(((.......)))..)).)))))..)))))((((((........)))))).....)))..))))))) ( -44.60) >DroYak_CAF1 127825 113 - 1 -UUGCAAUGUACUC-----CAGCUUACGCGUCCUGGGCUCGGCCGCCCUCAAUAUGUCGAUGGUUGCUCUGGGAGCCGCCGAUGCCAAUUAUGAAUUUGGAAUUCACGCCUGGGAUGUG -.............-----.......(((((((..((((((((.(((((((((.........))))....))).)).)))))..((((........)))).......)))..))))))) ( -37.90) >DroAna_CAF1 49262 112 - 1 UGUCUGA--UUCUG-----UAGCUUCCGCGUUUUGGGCUCUGCUGCCUUGAAUAUGGCCAUGGUGGCUCUGGGAGCUGCCGAUGCAAACUACGAGUUUGGCAUUCACGCCUGGGAUGUC .......--.((.(-----((((((((..((((.((((......)))).))))..((((.....))))..))))))))).))..(((((.....)))))((((((.......)))))). ( -36.90) >DroPer_CAF1 47980 116 - 1 --UUAAAUUUUCUCUCGAAUAGUUUGCGCGUCCUGGGCUCUGCUGCCCUGAACAUGUGCAUGGUGGCUCUGGGCGCCGCAGAUGCCAAUUACGAGUUUGGCAUCCAUGC-UGGGAUGUG --.(((((((((....))).))))))((((((((((((......)))).........((((((((((.......))))).((((((((........)))))))))))))-.)))))))) ( -46.00) >consensus __UUUAA__UACUC_____UAGCUUGCGCGUCCUGGGCUCUGCUGCCCUGAAUAUGUCCAUGGUGGCUCUGGGAGCCGCCGAUGCCAACUACGAAUUUGGCAUCCACGCCUGGGAUGUG ..........................((((((((((((...((((((.((........)).)))))).............((((((((........))))))))...)))))))))))) (-28.20 = -28.48 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:36 2006