Locus 8037

Sequence ID 3L_DroMel_CAF1
Location 21,167,287 – 21,167,401
Length 114
Max. P 0.500000
window13130

overview

Window 0

Location 21,167,287 – 21,167,401
Length 114
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 94.78
Mean single sequence MFE -32.17
Consensus MFE -29.00
Energy contribution -29.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.90
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21167287 114 + 23771897
AUAAGUGGGCGUGGCAUGACUUUUAUUUAAUUUGCAAAGCUUUUGUUGGCAGCAGCACAAAGUACGGUGCAAA-AAAGAUGAAAAUAGCACGAUGCUUGCCGCGCUGAAACUGCA
...(((.(((((((((....((((((((..((((((..((((((((((....))))).)))))....))))))-..))))))))..(((.....))))))))))))...)))... ( -37.00)
>DroSec_CAF1 38242 115 + 1
AUGAGUGGGCGUGGCAUGACUUUUAUUUAAUUUGCAAAGCUUUUGUUGGCAGCAGCACAAAGUACGGCGCAAAAAAAGAUGAAAAUAGCGCGAUGCUUGCCGCGCUGAAACUGCA
...(((.(((((((((....((((((((..(((((...((((((((((....))))).))))).....)))))...))))))))..(((.....))))))))))))...)))... ( -32.70)
>DroEre_CAF1 34366 115 + 1
AUGAGUGGGCGUGGCAUGACUUUUAUUUAAUUUGCAAAGCUUUUGUUGGCAGCAGCACAAAGUACAACGCAAAAAAAGAUGAAAAUAGCGCGCUGCUUACCGAGCUGAAACUGCA
.((.(((((((((((...(.((((((((..(((((...((((((((((....))))).))))).....)))))...)))))))).).)).))).)))))))).((.......)). ( -26.80)
>consensus
AUGAGUGGGCGUGGCAUGACUUUUAUUUAAUUUGCAAAGCUUUUGUUGGCAGCAGCACAAAGUACGGCGCAAAAAAAGAUGAAAAUAGCGCGAUGCUUGCCGCGCUGAAACUGCA
...(((.(((((((((....((((((((..(((((...((((((((((....))))).))))).....)))))...))))))))..(((.....))))))))))))...)))... (-29.00 = -29.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:30 2006