Locus 8035

Sequence ID 3L_DroMel_CAF1
Location 21,166,257 – 21,166,369
Length 112
Max. P 0.851042
window13125 window13126

overview

Window 5

Location 21,166,257 – 21,166,369
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 96.13
Mean single sequence MFE -31.06
Consensus MFE -28.21
Energy contribution -28.77
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.25
Structure conservation index 0.91
SVM decision value 0.79
SVM RNA-class probability 0.851042
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21166257 112 + 23771897
UAGCCGCAUCUAUUGGCUGCAACAUUUGUUGCAAUUUUUUAUGGCAUUUGUCUUGCCCAGAGUCGAGGCUCACAGUGUUGAACAAACAUUUCCUUAAUUUUCCUCGACGCCC
.(((((.......)))))(((((....)))))..........((((.......))))....(((((((.....((((((.....))))))...........))))))).... ( -29.19)
>DroSec_CAF1 37225 112 + 1
UAGCCGCGUCUAUUGGCUGCAACAUUUGUUGCAAUUUUUUAUGGCAUUUGUCUUGCCGAGAGUCGAGGCUCACAGUGUUGAACAAACAUUUCCUUAAUUUUACUCGACGCCC
.((((.((.((.(((((((((((....)))))).........(((....)))..))))).)).)).))))....(((((((..(((.(((.....))))))..))))))).. ( -32.60)
>DroEre_CAF1 33360 112 + 1
UAGCCGCGUCUAUUGGCUGCAACAUUUGUUGCAAUUUUUUAUGGCAUUUGUCUUGCCAAGAGUCGAGGCCCGCAGUGUUGAACAAACAUUUCCUUAAUUUUCCCCGACGCCC
.....(((((..(((((((((((....)))))).........(((....)))..)))))((((..(((.....((((((.....)))))).)))..)))).....))))).. ( -31.40)
>consensus
UAGCCGCGUCUAUUGGCUGCAACAUUUGUUGCAAUUUUUUAUGGCAUUUGUCUUGCCAAGAGUCGAGGCUCACAGUGUUGAACAAACAUUUCCUUAAUUUUCCUCGACGCCC
.....(((((..(((((((((((....)))))).........(((....)))..)))))((((..(((.....((((((.....)))))).)))..)))).....))))).. (-28.21 = -28.77 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 21,166,257 – 21,166,369
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 96.13
Mean single sequence MFE -30.30
Consensus MFE -28.01
Energy contribution -28.23
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.11
SVM RNA-class probability 0.588896
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21166257 112 - 23771897
GGGCGUCGAGGAAAAUUAAGGAAAUGUUUGUUCAACACUGUGAGCCUCGACUCUGGGCAAGACAAAUGCCAUAAAAAAUUGCAACAAAUGUUGCAGCCAAUAGAUGCGGCUA
.((((((((((....(((.((...((((.....)))))).))).)))))))....((((.......)))).........((((((....))))))))).............. ( -30.80)
>DroSec_CAF1 37225 112 - 1
GGGCGUCGAGUAAAAUUAAGGAAAUGUUUGUUCAACACUGUGAGCCUCGACUCUCGGCAAGACAAAUGCCAUAAAAAAUUGCAACAAAUGUUGCAGCCAAUAGACGCGGCUA
(((.((((((..((((.........))))(((((......))))))))))).)))((((.......))))..........(((((....)))))((((.........)))). ( -30.60)
>DroEre_CAF1 33360 112 - 1
GGGCGUCGGGGAAAAUUAAGGAAAUGUUUGUUCAACACUGCGGGCCUCGACUCUUGGCAAGACAAAUGCCAUAAAAAAUUGCAACAAAUGUUGCAGCCAAUAGACGCGGCUA
.((((((((((.......((....((......))...)).....)))))))...(((((.......)))))........((((((....))))))))).............. ( -29.50)
>consensus
GGGCGUCGAGGAAAAUUAAGGAAAUGUUUGUUCAACACUGUGAGCCUCGACUCUCGGCAAGACAAAUGCCAUAAAAAAUUGCAACAAAUGUUGCAGCCAAUAGACGCGGCUA
.((((((((((....(((.((...((((.....)))))).))).)))))))....((((.......)))).........((((((....))))))))).............. (-28.01 = -28.23 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:26 2006