| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,165,599 – 21,165,708 |
| Length | 109 |
| Max. P | 0.534851 |
| Location | 21,165,599 – 21,165,708 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.35 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -16.86 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21165599 109 - 23771897 GGGCAUUAACUAACUAGUUUAGCUAACCGAUGCUCGCUGAUUCAAUUAUAAAGAGGAAAGCAAUGGAGUCUCAAGGUUUAAGCUAUGCAGAGC--------AAAUAAUUGGUUUGGC--- (((((((((((....)))).........)))))))((..(..(((((((...((((..(....)....)))).........(((......)))--------..)))))))..)..))--- ( -23.20) >DroSec_CAF1 36586 109 - 1 GGGCAUUAGCUAACUAGUUAAGCUAACCAAUGCUCACUGAUUCAAUUAUAAAGAGGAGAGUAAUGGAGUCGAAAGACUUAAGCUGUGCAGAGC--------AAAUAAUUGGUUUAGC--- ........((((((((((((((((..(((.(((((.((..((........))..)).))))).)))((((....))))..)))).(((...))--------)..))))))).)))))--- ( -30.20) >DroEre_CAF1 32703 111 - 1 GGCCAUUAGCUGACUAGUU-----AACCGGUGCUCGCUGAUUCAAUUAUUAAGAGAGUA----UCAAGCUUAAAGGAUUGAACUGUGCAUAGUGGAUGUUGAACUAAGUGGGUUGGUGCA .((.(((((((.(((((((-----(((.(((((((.(((((......))).)).)))))----))..((....((.......))..)).........)))).))).))).))))))))). ( -27.90) >consensus GGGCAUUAGCUAACUAGUU_AGCUAACCGAUGCUCGCUGAUUCAAUUAUAAAGAGGAAAG_AAUGGAGUCUAAAGGAUUAAGCUGUGCAGAGC________AAAUAAUUGGUUUGGC___ (((((((((((....)))).........)))))))(((((..(((((((................(((((....)))))..(((......)))..........)))))))..)))))... (-16.86 = -16.10 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:25 2006