Locus 8033

Sequence ID 3L_DroMel_CAF1
Location 21,165,271 – 21,165,365
Length 94
Max. P 0.946829
window13122 window13123

overview

Window 2

Location 21,165,271 – 21,165,365
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 95.74
Mean single sequence MFE -34.43
Consensus MFE -29.93
Energy contribution -32.10
Covariance contribution 2.17
Combinations/Pair 1.00
Mean z-score -3.68
Structure conservation index 0.87
SVM decision value 1.36
SVM RNA-class probability 0.946029
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21165271 94 + 23771897
CCUUGAUAACUUUAUUAGCUGCGAAACCGCUGGCAGAUUUCUGCCAAGCGAUCGCAGAUUGUGUCAGUUGACUGUCAGUGAAAAUUGGCAACUG
......(((((.(((...((((((...(((((((((....))))).)))).))))))...)))..)))))..(((((((....))))))).... ( -35.60)
>DroSec_CAF1 36261 94 + 1
CCUUGAUAACUUUAUUAGCUGCGAAACCGCUGGCAGAUUUCUGCCAAGCGAUCGCAGAUUGUGUCAGUUGGUUGUCAGUGGAAAUUGGCAACUG
.......((((.(((...((((((...(((((((((....))))).)))).))))))...)))..))))((((((((((....)))))))))). ( -39.60)
>DroEre_CAF1 32424 94 + 1
CCUUGAUAACUUUAUUAGCUGCAAAACCACUGGCAGAUUUCUGCCAAGAGAUCGCAGAUUGUGUCAGUUGACUGUCAGUGGAAAUUGGCAACUG
...............(((.(((....((((((((((((((((....))))))).........(((....))))))))))))......))).))) ( -28.10)
>consensus
CCUUGAUAACUUUAUUAGCUGCGAAACCGCUGGCAGAUUUCUGCCAAGCGAUCGCAGAUUGUGUCAGUUGACUGUCAGUGGAAAUUGGCAACUG
......(((((.(((...((((((...(((((((((....))))).)))).))))))...)))..)))))..(((((((....))))))).... (-29.93 = -32.10 +   2.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 21,165,271 – 21,165,365
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 95.74
Mean single sequence MFE -28.82
Consensus MFE -25.65
Energy contribution -25.77
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -3.00
Structure conservation index 0.89
SVM decision value 1.37
SVM RNA-class probability 0.946829
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21165271 94 - 23771897
CAGUUGCCAAUUUUCACUGACAGUCAACUGACACAAUCUGCGAUCGCUUGGCAGAAAUCUGCCAGCGGUUUCGCAGCUAAUAAAGUUAUCAAGG
((((((.(..((......))..).)))))).......(((((((((((.(((((....))))))))))..)))))).................. ( -29.20)
>DroSec_CAF1 36261 94 - 1
CAGUUGCCAAUUUCCACUGACAACCAACUGACACAAUCUGCGAUCGCUUGGCAGAAAUCUGCCAGCGGUUUCGCAGCUAAUAAAGUUAUCAAGG
..((((.((........)).)))).((((........(((((((((((.(((((....))))))))))..)))))).......))))....... ( -29.16)
>DroEre_CAF1 32424 94 - 1
CAGUUGCCAAUUUCCACUGACAGUCAACUGACACAAUCUGCGAUCUCUUGGCAGAAAUCUGCCAGUGGUUUUGCAGCUAAUAAAGUUAUCAAGG
.((((((.((...((((((.(((((....)))....(((((.(.....).)))))....)).)))))).)).))))))................ ( -28.10)
>consensus
CAGUUGCCAAUUUCCACUGACAGUCAACUGACACAAUCUGCGAUCGCUUGGCAGAAAUCUGCCAGCGGUUUCGCAGCUAAUAAAGUUAUCAAGG
((((((....((......))....)))))).......(((((((((((.(((((....))))))))))..)))))).................. (-25.65 = -25.77 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:24 2006