Locus 8032

Sequence ID 3L_DroMel_CAF1
Location 21,164,077 – 21,164,170
Length 93
Max. P 0.571618
window13121

overview

Window 1

Location 21,164,077 – 21,164,170
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 96.06
Mean single sequence MFE -22.83
Consensus MFE -20.83
Energy contribution -21.50
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.91
SVM decision value 0.08
SVM RNA-class probability 0.571618
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21164077 93 - 23771897
ACAAGCAAAGAAAAACUGGAGCCAGGCAGCAAUGUUUGCUUCUUGGCAUUUCAUUUCGAAUUCAAUUUGACUGCAUGUCUUGCUGCUAUUUUU
...(((((.((((...((((((((((.((((.....)))).))))))..))))))))...........(((.....))))))))......... ( -23.20)
>DroSec_CAF1 35086 93 - 1
ACAAGCAAAGCAAAACUGGAGCCAGGCAGCAAUGUUUGCUUCUUGGCAUUUCAUUUCGAAUUCAAUUUGACUGCAUGUCUUGCUGCUAUUUUU
...((((..((((.((((..((((((.((((.....)))).))))))........((((((...))))))...)).)).))))))))...... ( -24.70)
>DroEre_CAF1 31239 93 - 1
AUCAGCAAAGGAAAACUGGAGCCAGCCAGCAAUGUUUGCUUCUUGGCAUUUCAUUUCGAAUUCAAUUUGACUGCAUGUCUCGCUGCUAUUUUU
..((((....((((..(((((((((..((((.....))))..)))))..))))))))...........(((.....)))..))))........ ( -20.60)
>consensus
ACAAGCAAAGAAAAACUGGAGCCAGGCAGCAAUGUUUGCUUCUUGGCAUUUCAUUUCGAAUUCAAUUUGACUGCAUGUCUUGCUGCUAUUUUU
...((((.((..(((.((((((((((.((((.....)))).))))))..(((.....))))))).)))..))(((.....)))))))...... (-20.83 = -21.50 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:22 2006