Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,162,538 – 21,162,669 |
Length | 131 |
Max. P | 0.998511 |
Location | 21,162,538 – 21,162,653 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.85 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -12.05 |
Energy contribution | -12.55 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.16 |
Mean z-score | -2.71 |
Structure conservation index | 0.41 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932654 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21162538 115 - 23771897 GCAAAA-GAGAGCCGAGACCAA-UUCAAGGCGAUUUAUGAAAAUUAAAACAUCUUUUCCAUGGCUUUCAAUUGCAC---UGCACCCAAAAGGAAAAGCAAAUGCAGCGGCAAAUGCAAGC ((....-((((((((.(.((..-.....))).......(((((..........)))))..))))))))..((((((---(((..((....))....((....)).))))....))))))) ( -24.50) >DroGri_CAF1 55310 96 - 1 GCUAAGCGAGUUAUGAAUGCAAUUUC-GAGUUGGUUAUGAAAAUGAAAACGAUUUU-CCAUGGCAUUCAAUUGCAGCAUUGCU-GCAAA--------------CAGCGGCAAA------- (((..((((....(((((((......-((((((.((((....))))...)))))).-.....))))))).))))))).(((((-((...--------------..))))))).------- ( -31.40) >DroSec_CAF1 33495 115 - 1 GCAAUA-GAGAGCCGAGACCAA-UUCAAGGCGAUUUAUGAAAAUGAAAACAUCUUUUCCACGGCUUUCAAUUGCAA---UGCACCCAAUAGGAAAAGCAAAGGCAACGGCAAAUGCAAGC (((((.-((((((((.(.((..-.....)))..(((((....))))).............)))))))).)))))..---((((.((....))....((...(....).))...))))... ( -31.80) >DroEre_CAF1 29668 116 - 1 GCAAAAUGAGAGCCGAGACCAA-UUCCAGGCGAUUUAUGAAAAUGAAAACAUAUUUUCCGCGGCUUUCAAUUGCAC---UGCUCGCAAUCAGAAGAGCAAAGGCAACGGAAAAUUCAACC ((((..(((((((((.(.((..-.....))).......(((((((......)))))))..))))))))).))))..---(((((..........)))))..(....)............. ( -28.60) >consensus GCAAAA_GAGAGCCGAGACCAA_UUCAAGGCGAUUUAUGAAAAUGAAAACAUCUUUUCCACGGCUUUCAAUUGCAC___UGCACCCAAAAGGAAAAGCAAAGGCAACGGCAAAUGCAAGC ((((...((((((((((......))).......(((((....)))))..............)))))))..)))).............................................. (-12.05 = -12.55 + 0.50)
Location | 21,162,578 – 21,162,669 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 72.82 |
Mean single sequence MFE | -21.42 |
Consensus MFE | -12.26 |
Energy contribution | -13.20 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.21 |
Mean z-score | -2.63 |
Structure conservation index | 0.57 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21162578 91 - 23771897 AAUACCAUCAU-CCAAGGCAAAA-GAGAGCCGAGACCAA-UUCAAGGCGAUUUAUGAAAAUUAAAACAUCUUUUCCAUGGCUUUCAAUUGCAC--U ...........-.....((((..-((((((((.(.((..-.....))).......(((((..........)))))..))))))))..))))..--. ( -16.70) >DroSec_CAF1 33535 91 - 1 AAUGCCAUCAU-CCAAGGCAAUA-GAGAGCCGAGACCAA-UUCAAGGCGAUUUAUGAAAAUGAAAACAUCUUUUCCACGGCUUUCAAUUGCAA--U ...........-.....(((((.-((((((((.(.((..-.....)))..(((((....))))).............)))))))).)))))..--. ( -23.20) >DroEre_CAF1 29708 92 - 1 AAUGCCAUCAU-CCAAGGCAAAAUGAGAGCCGAGACCAA-UUCCAGGCGAUUUAUGAAAAUGAAAACAUAUUUUCCGCGGCUUUCAAUUGCAC--U ..((((.....-....))))...(((((((((.(.((..-.....))).......(((((((......)))))))..))))))))).......--. ( -22.20) >DroMoj_CAF1 58844 84 - 1 -----------AUUGCAGCUGAGCAAUGGGCAAAUGCAAUUUUAAAGUCAUUUAUGAAAAUGAAAACCAUUUUGCUAUGGCUUUCAAUUGCAGCA- -----------..(((.(((.(....).)))...(((((((..((((((((....(((((((.....)))))).).)))))))).))))))))))- ( -23.60) >consensus AAUGCCAUCAU_CCAAGGCAAAA_GAGAGCCGAGACCAA_UUCAAGGCGAUUUAUGAAAAUGAAAACAUCUUUUCCACGGCUUUCAAUUGCAC__U .................((((...((((((((...((........))...(((((....))))).............))))))))..))))..... (-12.26 = -13.20 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:21 2006