Locus 8030

Sequence ID 3L_DroMel_CAF1
Location 21,162,399 – 21,162,503
Length 104
Max. P 0.844949
window13118

overview

Window 8

Location 21,162,399 – 21,162,503
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 93.59
Mean single sequence MFE -25.97
Consensus MFE -25.38
Energy contribution -24.50
Covariance contribution -0.88
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.98
SVM decision value 0.77
SVM RNA-class probability 0.844949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21162399 104 + 23771897
UUUUGAGGAAACUAUUAAAGCGCAGCAUGGAAAAUGUGAAAAUGAAUAUAAUUCGCUGUUAUUGGCCAAUGGCUGUUGCUGUUUCAGUUUUCUCUUUAGUGCGA
....(((((((((.....((((((((.(((..((((((((...........)))))....)))..)))...)))).)))).....))))))))).......... ( -27.20)
>DroSec_CAF1 33356 104 + 1
UUUUGAGGAAACUAUUAAAGCGCAGCAUGGAAAAUGUGAAAAUGAAUAUAAUUCGCUGUUAUUGGCCAAUGGCUGUUGCUGUUUCAGUUUUCUCUUUAGUGCGA
....(((((((((.....((((((((.(((..((((((((...........)))))....)))..)))...)))).)))).....))))))))).......... ( -27.20)
>DroEre_CAF1 29529 104 + 1
UUUUGAGGAAACUAUUAAAGCGCAGCAGGAAAAAUGUGAAAAUGAAUAUAAUUCGCUGCUAUUGGCCAAUCGCUGUUGCUGUUUAAGUUUCUUUUUUAGUAUGA
....(((((((((.....((((((((..(((..((((........))))..)))(((......))).....)))).)))).....))))))))).......... ( -23.50)
>consensus
UUUUGAGGAAACUAUUAAAGCGCAGCAUGGAAAAUGUGAAAAUGAAUAUAAUUCGCUGUUAUUGGCCAAUGGCUGUUGCUGUUUCAGUUUUCUCUUUAGUGCGA
....(((((((((.....((((((((..(((..((((........))))..)))(((......))).....)))).)))).....))))))))).......... (-25.38 = -24.50 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:19 2006