Locus 803

Sequence ID 3L_DroMel_CAF1
Location 2,408,997 – 2,409,103
Length 106
Max. P 0.970621
window1236

overview

Window 6

Location 2,408,997 – 2,409,103
Length 106
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 80.15
Mean single sequence MFE -24.27
Consensus MFE -18.91
Energy contribution -18.98
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -2.19
Structure conservation index 0.78
SVM decision value 1.66
SVM RNA-class probability 0.970621
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2408997 106 + 23771897
AAAAAAACAGGCUCCUGGUGGGAUUCACUGGGAUCUGGUUGAACAUGGAAAGAAAAACUAG--AGUUUUUCGAAAGAAAUAUUUA-ACUAUAAA-AUGGA-GUUCCAAGUG
.......((((.(((..(((.....)))..))))))).....((.(((((.(((((((...--.)))))))..............-.((((...-)))).-.))))).)). ( -26.90)
>DroSim_CAF1 36204 110 + 1
AA-AAAACAGGCUCCUGGUGGGAUUCACUGGGAUCUGGUUGAACAUGGAAAGAAAAAGUAGAGAGUGUUUCAAAAGAAAGAUUUAAACUAUACAUAUGCACAUUCCAAAUG
..-....((((.(((..(((.....)))..)))))))........(((((.......((((.((((.((((....)))).))))...)))).(....)....))))).... ( -23.00)
>DroEre_CAF1 35944 101 + 1
AA-CAAACAGGCUCCUGGUGGGAUUCACUGGGAUCUGGUUGAACAUGGAAAGAAAAACUAGUGAGUGUUUCAACAGAAAGAUUUAA-AGUGGU--------AUUUAAAACG
..-(((.((((.(((..(((.....)))..))))))).)))...........(((.((((.(((((.((((....)))).))))).-..))))--------.)))...... ( -24.40)
>DroYak_CAF1 36631 95 + 1
AA--AAACAGGCUCCUGGUGGGAUUCACUGGGAUCUGGUUGAACAUGGAGAGAAAAACUAGUGAGUGUUUCUAAGGGAAGAUUUAA-CUAUAU--------AUUCA-----
..--...((((.(((..(((.....)))..)))))))..............(((....((((((((.((((....)))).)))).)-)))...--------.))).----- ( -22.80)
>consensus
AA_AAAACAGGCUCCUGGUGGGAUUCACUGGGAUCUGGUUGAACAUGGAAAGAAAAACUAGUGAGUGUUUCAAAAGAAAGAUUUAA_CUAUAU________AUUCAAAAUG
.......((((.(((..(((.....)))..))))))).........................((((.((((....)))).))))........................... (-18.91 = -18.98 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:35 2006