| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,156,142 – 21,156,293 |
| Length | 151 |
| Max. P | 0.841332 |
| Location | 21,156,142 – 21,156,255 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 96.46 |
| Mean single sequence MFE | -36.57 |
| Consensus MFE | -34.05 |
| Energy contribution | -34.50 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841332 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21156142 113 - 23771897 CACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUUUAUUUCAAGAGAUAUAUCGGCAGAAGAGGCAAGACGCCG ..........(((.((((.((..(((..((((((((((((((((...((((.......))))...)))))))))).))))))..)))....)))))).)))(((.....))). ( -31.50) >DroSec_CAF1 27195 113 - 1 CACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUUUAUUCCAAGAGAUAUAUCGGCGGGAGGGGCAAGACGCCG ..((((((.((.((((...((....)).((((((((((((((((...((((.......))))...)))))))))).))))))..)))).)).))))))...(((.....))). ( -39.10) >DroEre_CAF1 23543 113 - 1 UACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUUUAUUCCAAGAGAUAUAUCGGCGGGAGGGGCAAGAAGCCG ..((((((.((.((((...((....)).((((((((((((((((...((((.......))))...)))))))))).))))))..)))).)).))))))...(((.....))). ( -39.10) >consensus CACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUUUAUUCCAAGAGAUAUAUCGGCGGGAGGGGCAAGACGCCG ..((((((.((.((((...((....)).((((((((((((((((...((((.......))))...)))))))))).))))))..)))).)).))))))...(((.....))). (-34.05 = -34.50 + 0.45)
| Location | 21,156,181 – 21,156,293 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 95.83 |
| Mean single sequence MFE | -27.37 |
| Consensus MFE | -26.40 |
| Energy contribution | -26.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21156181 112 - 23771897 UUUCCCCAUUUUCCGCUGCCAUUCGACCCCCUUUGCACCACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUU .....((((.....((((((..............((.......))........(((((.(((((((.(((........))).))).)))).))))))))))).))))..... ( -26.30) >DroSec_CAF1 27234 112 - 1 UUUCCCCAUUUUCCGCUGCCAUUCGACCCCCUUCGCACCACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUU .....((((.....((((((..............((.......))........(((((.(((((((.(((........))).))).)))).))))))))))).))))..... ( -26.60) >DroEre_CAF1 23582 110 - 1 UUUCCCCAUUUUCCGCUGCCAUUCGCC--CUCUUGCACUACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUU .................(((((..(((--..((((((((...((..((.....))..))(((((((.(((........))).))).)))))))))))).))).))))).... ( -29.20) >consensus UUUCCCCAUUUUCCGCUGCCAUUCGACCCCCUUUGCACCACCCGCUCAUCUAUUGUACGUAAUUGAUUGGAAAAAUGGCCAUUCAUGUUAAGUGCAGGCGGCUAUGGCCAUU .....((((.....((((((..............((.......))........(((((.(((((((.(((........))).))).)))).))))))))))).))))..... (-26.40 = -26.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:18 2006