Locus 8028

Sequence ID 3L_DroMel_CAF1
Location 21,155,026 – 21,155,134
Length 108
Max. P 0.888035
window13115

overview

Window 5

Location 21,155,026 – 21,155,134
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 95.06
Mean single sequence MFE -31.10
Consensus MFE -28.31
Energy contribution -28.87
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.33
Structure conservation index 0.91
SVM decision value 0.95
SVM RNA-class probability 0.888035
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21155026 108 - 23771897
UGUAAUUUUCACAUUUUUACUCAUCAACGCCAACGUCAUUCUUCACGAGAUGACUUGCCCGCGGCCACCCAUUGCCCAUUUCCAUUGUGUGGGCGUGGCAAGCCGGCU
.((((...........))))........(((...((((((........))))))(((((.(((.((((.((.((........)).)).)))).))))))))...))). ( -30.80)
>DroSec_CAF1 26081 108 - 1
UGUAAUUUUCACAUUUUUACUCAUCAACGCCAACGUCAUUCUUCACGAGAUGACUUGCCCGCGGCCACCCAUCGCCCACUUCCAUUGUGUGGGCGUGGCAAGCCGGCU
.((((...........))))........(((...((((((........))))))........(((...(((.(((((((.........))))))))))...)))))). ( -33.70)
>DroEre_CAF1 22447 104 - 1
UGUAAUUUUCACAUUUUUACUCAUCAACGCCAACGUCAUUCUUCACGAGAU----UGUCCGCGGCCCCCCAUCGCCCAUUUCCAUUGUGUGGGCGUGGCAAGCCGGCU
.((((...........))))........(((...(.((.((((...)))).----)).)...(((...(((.(((((((.........))))))))))...)))))). ( -28.80)
>consensus
UGUAAUUUUCACAUUUUUACUCAUCAACGCCAACGUCAUUCUUCACGAGAUGACUUGCCCGCGGCCACCCAUCGCCCAUUUCCAUUGUGUGGGCGUGGCAAGCCGGCU
.((((...........))))........(((...((((((........))))))........(((...(((.(((((((.........))))))))))...)))))). (-28.31 = -28.87 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:16 2006