Locus 8026

Sequence ID 3L_DroMel_CAF1
Location 21,148,193 – 21,148,286
Length 93
Max. P 0.610798
window13111

overview

Window 1

Location 21,148,193 – 21,148,286
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 88.53
Mean single sequence MFE -35.33
Consensus MFE -23.26
Energy contribution -24.60
Covariance contribution 1.34
Combinations/Pair 1.11
Mean z-score -2.79
Structure conservation index 0.66
SVM decision value 0.16
SVM RNA-class probability 0.610798
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21148193 93 - 23771897
GCGGGUGCCAACGACCUUGAUCGGUUGGUUUUAUUCGCGUGAGCGGGAAAACAUAAAGUCAAGGGCUACCUGUCUUUUUCGUUGGCACCAUCG
...((((((((((((((((((......(((((.(((((....)))))))))).....)))))))((.....)).....))))))))))).... ( -41.60)
>DroSec_CAF1 19442 93 - 1
GAGGGUGCCAACGACCUUGAUCGGUUGGUUUUAUUCGAGUGAGCGGGAAAACAUAAAGUCAGAGGCUACCUGUCUUUUUCGUUGGCACCGUCG
((.((((((((((((((...(((.((((......)))).)))..))).......((((.(((.(....)))).)))).))))))))))).)). ( -38.40)
>DroEre_CAF1 15759 93 - 1
GCGGAUGGCCACGGCCUUGAUCGGUUGGUUUAAAUCGAGUGAGCGGGAAAACAUAAAGUCAAGGUCUACCUGUCUUUCUGGUUGGCAGCAUCA
...((((((((.(((((((((......((((...(((......)))..)))).....))))))))).(((.........)))))))..)))). ( -26.00)
>consensus
GCGGGUGCCAACGACCUUGAUCGGUUGGUUUUAUUCGAGUGAGCGGGAAAACAUAAAGUCAAGGGCUACCUGUCUUUUUCGUUGGCACCAUCG
...(((((((((((.((((.(((.((((......)))).))).)))).............((((((.....)))))).))))))))))).... (-23.26 = -24.60 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:12 2006