Locus 8025

Sequence ID 3L_DroMel_CAF1
Location 21,142,695 – 21,142,815
Length 120
Max. P 0.922019
window13110

overview

Window 0

Location 21,142,695 – 21,142,815
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.17
Mean single sequence MFE -41.70
Consensus MFE -16.56
Energy contribution -18.09
Covariance contribution 1.53
Combinations/Pair 1.28
Mean z-score -2.56
Structure conservation index 0.40
SVM decision value 1.14
SVM RNA-class probability 0.922019
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21142695 120 + 23771897
GCGAUCCAUCUCCUGGUUGAGCUCAAUCUUCUUGCGCACGUUGGUGAAGUACUGGAACUCCAGGCGAAGAUCGUUGAGCGUGGAGUUGUUCUCCGCAUCCAUGCGAACCAUUUCGCGCUG
((...........(((....(((((((..((((((.(((....))).....((((....)))))).))))..)))))))((((((.....))))))..))).(((((....))))))).. ( -42.80)
>DroVir_CAF1 34284 120 + 1
GCGAUCCGCAUGCAUCCGAUCCUCGAUCUUCUUGCGCACAUUCGUAAAGUACUCGAACUCAAGGCGCAAAUCGUUAAUGGUCCCAUUGUUCUGCGUCUCGAUGCGCAGCGUCUCGCUCUG
((((..(((........((((...))))....((((((..((((.........)))).((.(((((((......(((((....)))))...))))))).)))))))))))..)))).... ( -37.60)
>DroPse_CAF1 19134 120 + 1
GCGAUCCAUUUCCUGAUUCUGCUCGAUCUUCUUGCGCACACGCGUAAAGUACUGGAACUCCAGGCGAAGAUCAUUUAGAGUCGAGUUGUUUUCCGACUCGACUCGCAGCAUUUCCUUGUU
..............(((.((((..(((((((((((((....)))))).((.((((....))))))))))))).....(((((((((((.....))))))))))))))).)))........ ( -46.60)
>DroAna_CAF1 31370 120 + 1
CCGGUCCAUCUCCUGGUUCAACUCGAUCUUCUUGCGCACAUUGGUGAAGUACUGGAACUCCAUCCGGAGAUCAUUCAGGGUGGAGUUGUUCUCCGCCUCCAUGCGAAGGAUGUCUCGCUG
((((........))))........(((.(((((.((((....((((.((....(.(((((((((((((.....))).)))))))))).).)).))))....))))))))).)))...... ( -38.50)
>DroMoj_CAF1 37353 120 + 1
GCGAUCCGCAUGCAUGCGAUCCUCGAUCUUCUUGCGCACAUUCGAGAAGUACUCGAACUCCAGGCGCAGAUCGUUGAUCGUCGCAUUAUUCUCCGUCUCGACGCGCAGCGUGUCCUGCUG
((((..(((.((((((((((..(((((..(((.((((...((((((.....))))))......)))))))..)))))..))))))).......(((....))).))))))..))..)).. ( -41.80)
>DroPer_CAF1 19950 120 + 1
GCGAUCCAUUUCCUGAUUCUGCUCGAUCUUCUUACGCACACGCGUAAAGUACUGAAACUCCAGGCGAAGAUCAUUUAGAGUCGAGUUGUUUUCCGACUCGACUCGCAGCAUUUCCUUGUU
..............(((.((((..(((((((((((((....)))))).((.(((......)))))))))))).....(((((((((((.....))))))))))))))).)))........ ( -42.90)
>consensus
GCGAUCCAUAUCCUGGUUCUGCUCGAUCUUCUUGCGCACAUUCGUAAAGUACUGGAACUCCAGGCGAAGAUCAUUGAGAGUCGAGUUGUUCUCCGACUCGACGCGCAGCAUUUCCCGCUG
((......................((((((((((((......)))))....((((....))))..))))))).....(((((((.............)))))))...))........... (-16.56 = -18.09 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:11 2006