| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,142,063 – 21,142,154 |
| Length | 91 |
| Max. P | 0.774072 |
| Location | 21,142,063 – 21,142,154 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 64.69 |
| Mean single sequence MFE | -32.22 |
| Consensus MFE | -5.59 |
| Energy contribution | -6.57 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.17 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21142063 91 - 23771897 UUCAAGUCCAGAAAGGUCGUGCAUUCACCGACGGCACACAAGGAGGCCAAGUGGGAGGCCGAAG--CCACUUUGAAUGAGGUGAUUCUGGACU ....(((((((((...(((.((.(((.(((..(((.(....)...)))...)))))))))))..--.((((((....)))))).))))))))) ( -32.00) >DroPse_CAF1 18501 78 - 1 UACAAGUCGCGCAUUCUCUGCAAGUCCAAGAUGGCCCACAAAGAGGCCAAGUGGGAUGCGGAGAAAGUACUGC--GCCAA------------- ........((((((((((((((..((((...(((((........)))))..)))).))))))))).....)))--))...------------- ( -32.90) >DroSec_CAF1 13236 91 - 1 UUCAAGUCCAGGAAGGUCGCGCAUUCGCCGACGGCACACAAGGAGGCCAAGUGGGAGGCCGAAG--CCACUUUGAAUGAGGUGAUUCUGGACU ....((((((((...(((((.((((((((...)))......((.((((........))))....--)).....)))))..))))))))))))) ( -34.80) >DroEre_CAF1 9470 91 - 1 UUUAGGUCCAGGAAGGUCCUGAAGUCACCGAUGGCCCACAAGGAGGCCAAGUGGGAGGCCGAAG--UCACUUUGAAAGAGGUGAUUCUGGAUU ((((((.((.....)).)))))).((.(((.(((((........)))))..)))))..(((.((--(((((((....))))))))).)))... ( -34.50) >DroAna_CAF1 30741 91 - 1 UACCGCGCCAGGAAGGUCCUUAGAUCGCCGAUAGCCCACAAGGAGUUCAAGUGGGAAGCUGAGG--CCACUUUGAAAAACGUAAUCGCGGACG ..(((((.......((.((((((....((.(((((((....)).)))...)).))...))))))--))((.((....)).))...)))))... ( -26.20) >DroPer_CAF1 19317 78 - 1 UACAAGUCGCGCAUUCUCUGCAAGUCCAAGAUGGCCCACAAAGAGGCCAAGUGGGAUGCGGAGAAAGUACUGC--GCCAA------------- ........((((((((((((((..((((...(((((........)))))..)))).))))))))).....)))--))...------------- ( -32.90) >consensus UACAAGUCCAGGAAGGUCCUGAAGUCACCGAUGGCCCACAAGGAGGCCAAGUGGGAGGCCGAAG__CCACUUUGAAAGAGGUGAUUCUGGACU ..........((....(((....(((.(((..((((........))))...))))))..)))....))......................... ( -5.59 = -6.57 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:10 2006