Locus 8020

Sequence ID 3L_DroMel_CAF1
Location 21,130,996 – 21,131,098
Length 102
Max. P 0.822593
window13100

overview

Window 0

Location 21,130,996 – 21,131,098
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.17
Mean single sequence MFE -29.26
Consensus MFE -18.17
Energy contribution -18.17
Covariance contribution 0.00
Combinations/Pair 1.30
Mean z-score -1.45
Structure conservation index 0.62
SVM decision value 0.69
SVM RNA-class probability 0.822593
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21130996 102 + 23771897
AUUUACUAUCUGAUCACCAAGAAAUCCAGCUGGGGAAAGCCCACCUACGAACUUCUCCAGAGUUCCUUGAUCGCCAUGCGAAAACACAUGGUAUGU------------------UUAUGU
...........(((((...........((.((((.....)))).))..((((((.....))))))..)))))((((((.(....).))))))....------------------...... ( -23.40)
>DroGri_CAF1 22346 116 + 1
AUUUACUAUCUAAUCACCAAGCAGAGCAGCUGGGGUAAACCCACCUAUCAGCUGCUCCACAGCUCCCUGACUGCCAUGAAGGAGCAUAUGGUAAGCAAGUGGAGA----UUAACCCAUGA
..........(((((.(((.((.(((((((((((((......))))..)))))))))....(((((..............))))).........))...))).))----)))........ ( -36.64)
>DroSec_CAF1 2203 116 + 1
AUUUACUAUCUGAUCACCAAGAAAUCCAGCUGGGGAAAGCCCACCUACGAACUUCUCCAGAGUUCCUUGAUCGCCAUGCGAAAACACAUGGUAUGUAUG--GG--UCUACCAAUUUAUGU
...(((.....(((((...........((.((((.....)))).))..((((((.....))))))..)))))((((((.(....).))))))..)))((--(.--....)))........ ( -26.60)
>DroYak_CAF1 2104 106 + 1
AUUUACUAUCUGGUCACCAAGAAAUCCAGCUGGGGAAAGCCCACCUACGAACUUCUCCAGAGUUCCUUGAUCGCCAUGCGAAAGCACAUGGUAUGUA----GG--U--------UUUCCU
.....(((.((((............)))).)))((((((((.((....((((((.....)))))).......(((((((....)))..))))..)).----))--)--------))))). ( -32.80)
>DroAna_CAF1 21136 107 + 1
GUGUACUAUCUGGUCACCAAGAAAACCAGUUGGGGCAAGCCCACCUAUGAACUCCUCUACAGCUCCUUGAUAGCCAUGCGGCAGCAUAUGGUAAGGAUU--GG--AAU---------UCC
(((.(((....))))))...(((..((((((((((....)))......((.....))..))))(((((....(((((((....)))..))))))))).)--))--..)---------)). ( -24.30)
>DroPer_CAF1 10879 99 + 1
GUCUACAAUCUCGUUACCAAGCAAACGAGCUGGGGCAAGCCCACCUAUCAGCUUCUCCACAGCUCCUUGACCGCCAUGCGGCAGCAUAUGGUGAGUG----GA-----------------
.(((((.......((((((.((....(((((((((.((((..........)))).))).))))))..((.((((...))))))))...)))))))))----))----------------- ( -31.81)
>consensus
AUUUACUAUCUGAUCACCAAGAAAACCAGCUGGGGAAAGCCCACCUACGAACUUCUCCACAGCUCCUUGAUCGCCAUGCGAAAGCACAUGGUAAGUA____GG___________UUAUGU
...........(((((...........((.((((.....)))).))..((((((.....))))))..)))))((((((........))))))............................ (-18.17 = -18.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:02 2006