Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,405,138 – 2,405,237 |
Length | 99 |
Max. P | 0.999127 |
Location | 2,405,138 – 2,405,237 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -28.76 |
Energy contribution | -28.64 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.76 |
Structure conservation index | 0.86 |
SVM decision value | 3.39 |
SVM RNA-class probability | 0.999127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2405138 99 + 23771897 ACAGCCAUUUUUGGCCAACAUUUUUGGGUGCACUCAUCCAUGAUUCGUGCACCAGCAGUCGACGACAAUAAUUCUUUGUCAAUG--UGGCAUCGAAAGAUA ...(((((..(((((...((....))(((((((..(((...)))..)))))))....))))).(((((.......)))))...)--))))(((....))). ( -31.10) >DroSec_CAF1 32902 101 + 1 ACAGCCAUUUUUGGCCAGCGUUUUUGGGUGCACUCAUCCAUGAUUCGUGCACCAGCAGUCGACGACAAUGAGUCUUUGUCAAUGUGUGGCAUCGAAAGAUA ...(((((..(((((..(((......(((((((..(((...)))..)))))))......)).)(((.....)))...)))))...)))))(((....))). ( -32.60) >DroSim_CAF1 32473 101 + 1 ACAGCCAUUUUUGGCCAGCGUUUUUGGGUGUACUCAUCCAUGAUUCGUGCACCAGCAGUCGCCGACAAUGAGACUUUGUCAAUGUGUGGCAUCGAAAGAUA ...(((((....(((..(((..((((((((....)))))).))..)))((....))....)))(((((.......))))).....)))))(((....))). ( -31.40) >DroEre_CAF1 32077 99 + 1 ACAGCCAUUUUUGGCUGGCGUUUUUGGGUGCACUCAUCCAUGAUUCGUGCACCACCAGUCGACGACAAUGAGUCUUUGUCAAUG--UGGCAUCGAAAGAUA ...(((((..((((((((((....))(((((((..(((...)))..))))))).)))))))).(((((.......)))))...)--))))(((....))). ( -37.50) >DroYak_CAF1 32777 99 + 1 ACAGCCAUUUUUGGCUGGCGUUUUUGGGUGCACUCAUCCAUGAUUCGUGCACCAGCAGUCGACGACAAUGAGUCUUUGUCAAUG--UGGCAUCGAAAGAUA ...(((((..(((((((.((....))(((((((..(((...)))..)))))))..))))))).(((((.......)))))...)--))))(((....))). ( -34.80) >consensus ACAGCCAUUUUUGGCCAGCGUUUUUGGGUGCACUCAUCCAUGAUUCGUGCACCAGCAGUCGACGACAAUGAGUCUUUGUCAAUG__UGGCAUCGAAAGAUA ...((((...(((((...((....))(((((((..(((...)))..)))))))....))))).(((((.......)))))......))))(((....))). (-28.76 = -28.64 + -0.12)
Location | 2,405,138 – 2,405,237 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -25.18 |
Energy contribution | -24.78 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -1.91 |
Structure conservation index | 0.86 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980404 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2405138 99 - 23771897 UAUCUUUCGAUGCCA--CAUUGACAAAGAAUUAUUGUCGUCGACUGCUGGUGCACGAAUCAUGGAUGAGUGCACCCAAAAAUGUUGGCCAAAAAUGGCUGU ...........((((--....(((((.......)))))((((((....(((((((..(((...)))..))))))).......))))))......))))... ( -29.10) >DroSec_CAF1 32902 101 - 1 UAUCUUUCGAUGCCACACAUUGACAAAGACUCAUUGUCGUCGACUGCUGGUGCACGAAUCAUGGAUGAGUGCACCCAAAAACGCUGGCCAAAAAUGGCUGU ......((((((....(((.(((.......))).))))))))).....(((((((..(((...)))..)))))))..........(((((....))))).. ( -27.90) >DroSim_CAF1 32473 101 - 1 UAUCUUUCGAUGCCACACAUUGACAAAGUCUCAUUGUCGGCGACUGCUGGUGCACGAAUCAUGGAUGAGUACACCCAAAAACGCUGGCCAAAAAUGGCUGU ......((((((.....))))))...((((.....(((((((......((((.((..(((...)))..)).))))......))))))).......)))).. ( -24.70) >DroEre_CAF1 32077 99 - 1 UAUCUUUCGAUGCCA--CAUUGACAAAGACUCAUUGUCGUCGACUGGUGGUGCACGAAUCAUGGAUGAGUGCACCCAAAAACGCCAGCCAAAAAUGGCUGU .(((..((((((..(--((.(((.......))).)))))))))..)))(((((((..(((...)))..))))))).........((((((....)))))). ( -33.50) >DroYak_CAF1 32777 99 - 1 UAUCUUUCGAUGCCA--CAUUGACAAAGACUCAUUGUCGUCGACUGCUGGUGCACGAAUCAUGGAUGAGUGCACCCAAAAACGCCAGCCAAAAAUGGCUGU ......((((((..(--((.(((.......))).))))))))).....(((((((..(((...)))..))))))).........((((((....)))))). ( -31.30) >consensus UAUCUUUCGAUGCCA__CAUUGACAAAGACUCAUUGUCGUCGACUGCUGGUGCACGAAUCAUGGAUGAGUGCACCCAAAAACGCUGGCCAAAAAUGGCUGU ......((((((.....))))))....(((........))).......(((((((..(((...)))..))))))).........((((((....)))))). (-25.18 = -24.78 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:34 2006